View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_high_25 (Length: 392)

Name: NF1720_high_25
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_high_25
NF1720_high_25
[»] chr2 (40 HSPs)
chr2 (308-375)||(31596062-31596129)
chr2 (22-114)||(6358157-6358249)
chr2 (34-114)||(39201514-39201594)
chr2 (20-105)||(22593141-22593225)
chr2 (21-105)||(10026631-10026715)
chr2 (21-103)||(331508-331590)
chr2 (12-114)||(37560171-37560273)
chr2 (33-122)||(24179587-24179676)
chr2 (21-114)||(25540410-25540503)
chr2 (21-101)||(38005409-38005489)
chr2 (21-120)||(7787063-7787162)
chr2 (21-104)||(38962770-38962853)
chr2 (36-114)||(7747296-7747374)
chr2 (44-122)||(26805326-26805404)
chr2 (21-114)||(41220642-41220735)
chr2 (11-75)||(31596477-31596541)
chr2 (21-101)||(39806904-39806984)
chr2 (34-122)||(42770649-42770737)
chr2 (36-103)||(18649043-18649110)
chr2 (36-102)||(3643905-3643971)
chr2 (37-114)||(10669615-10669692)
chr2 (21-114)||(12455317-12455410)
chr2 (21-114)||(16325602-16325695)
chr2 (21-114)||(44139491-44139584)
chr2 (21-105)||(10046492-10046575)
chr2 (22-114)||(12864232-12864324)
chr2 (131-178)||(31596365-31596413)
chr2 (21-105)||(34356213-34356297)
chr2 (11-114)||(8410128-8410231)
chr2 (131-170)||(31580273-31580312)
chr2 (21-108)||(45263679-45263766)
chr2 (64-114)||(1773650-1773700)
chr2 (36-114)||(10823082-10823160)
chr2 (36-82)||(13026449-13026495)
chr2 (249-283)||(31596259-31596293)
chr2 (12-105)||(11069876-11069969)
chr2 (21-114)||(18902536-18902629)
chr2 (28-105)||(35946752-35946829)
chr2 (46-114)||(34346293-34346361)
chr2 (21-105)||(41031921-41032005)
[»] chr5 (33 HSPs)
chr5 (12-114)||(40117414-40117516)
chr5 (21-105)||(9805012-9805096)
chr5 (21-105)||(23383665-23383749)
chr5 (21-114)||(42086335-42086428)
chr5 (14-121)||(24463885-24463992)
chr5 (36-122)||(9168251-9168337)
chr5 (11-101)||(14974343-14974433)
chr5 (21-114)||(1538439-1538532)
chr5 (37-122)||(3653912-3653997)
chr5 (46-122)||(39099777-39099853)
chr5 (50-105)||(20255406-20255461)
chr5 (12-114)||(14588623-14588725)
chr5 (25-103)||(19572736-19572814)
chr5 (35-97)||(21375373-21375435)
chr5 (21-114)||(5731926-5732019)
chr5 (21-114)||(8513527-8513620)
chr5 (41-122)||(35812996-35813077)
chr5 (28-105)||(41163475-41163552)
chr5 (12-105)||(42861233-42861326)
chr5 (36-104)||(9812895-9812963)
chr5 (21-105)||(12081916-12082000)
chr5 (21-101)||(38897738-38897817)
chr5 (21-108)||(22655170-22655256)
chr5 (12-114)||(7308370-7308472)
chr5 (21-75)||(11845846-11845900)
chr5 (12-114)||(20525837-20525939)
chr5 (25-103)||(20682634-20682712)
chr5 (25-114)||(5079343-5079431)
chr5 (33-122)||(25452945-25453033)
chr5 (25-102)||(30349591-30349668)
chr5 (36-104)||(12705037-12705105)
chr5 (36-104)||(12766154-12766222)
chr5 (68-108)||(25950606-25950646)
[»] chr7 (33 HSPs)
chr7 (21-114)||(43861978-43862071)
chr7 (12-114)||(38578873-38578975)
chr7 (21-114)||(48804693-48804786)
chr7 (21-122)||(13095868-13095969)
chr7 (21-114)||(48244362-48244455)
chr7 (12-104)||(23658180-23658272)
chr7 (21-114)||(27028289-27028382)
chr7 (21-122)||(39420847-39420948)
chr7 (21-105)||(17748397-17748481)
chr7 (46-114)||(27875094-27875162)
chr7 (20-103)||(4195219-4195302)
chr7 (11-114)||(14650317-14650420)
chr7 (21-104)||(22973977-22974060)
chr7 (21-108)||(39474950-39475037)
chr7 (12-114)||(8734692-8734794)
chr7 (21-114)||(1605951-1606044)
chr7 (21-114)||(34659236-34659329)
chr7 (20-105)||(47341885-47341970)
chr7 (53-121)||(28396159-28396227)
chr7 (21-105)||(42032106-42032190)
chr7 (21-104)||(36619270-36619353)
chr7 (46-105)||(41945508-41945567)
chr7 (51-122)||(45697188-45697259)
chr7 (12-108)||(4228766-4228859)
chr7 (36-122)||(16802148-16802234)
chr7 (21-122)||(1797470-1797571)
chr7 (21-114)||(10047882-10047975)
chr7 (21-114)||(18785679-18785772)
chr7 (29-101)||(23060697-23060767)
chr7 (45-97)||(3353458-3353510)
chr7 (64-120)||(5039418-5039474)
chr7 (52-104)||(24983435-24983487)
chr7 (21-101)||(26423306-26423386)
[»] chr4 (41 HSPs)
chr4 (12-105)||(40272346-40272439)
chr4 (21-114)||(40780867-40780960)
chr4 (11-114)||(13073540-13073643)
chr4 (36-114)||(42722583-42722661)
chr4 (30-122)||(49260663-49260755)
chr4 (35-114)||(7246652-7246731)
chr4 (11-101)||(20532428-20532518)
chr4 (12-114)||(21429304-21429406)
chr4 (21-122)||(3159467-3159568)
chr4 (21-114)||(16450312-16450405)
chr4 (21-114)||(29895799-29895892)
chr4 (21-114)||(53599072-53599165)
chr4 (34-114)||(17080068-17080148)
chr4 (46-108)||(5472860-5472922)
chr4 (21-114)||(4738630-4738723)
chr4 (21-114)||(8889034-8889127)
chr4 (7-88)||(20354635-20354716)
chr4 (35-104)||(36262783-36262852)
chr4 (25-114)||(38166043-38166132)
chr4 (12-105)||(52950085-52950178)
chr4 (21-93)||(1446838-1446910)
chr4 (22-114)||(2559320-2559412)
chr4 (21-121)||(8064797-8064897)
chr4 (21-105)||(47078470-47078554)
chr4 (21-114)||(1940783-1940873)
chr4 (21-100)||(6779223-6779302)
chr4 (12-103)||(14124019-14124110)
chr4 (42-105)||(14567272-14567335)
chr4 (33-108)||(17946513-17946588)
chr4 (24-114)||(25406569-25406662)
chr4 (12-103)||(38168260-38168350)
chr4 (11-101)||(3507273-3507362)
chr4 (44-122)||(14597898-14597976)
chr4 (21-75)||(20421785-20421839)
chr4 (36-114)||(21192667-21192745)
chr4 (21-71)||(24166462-24166512)
chr4 (68-114)||(27531676-27531722)
chr4 (21-114)||(55921046-55921139)
chr4 (21-105)||(38075445-38075529)
chr4 (28-108)||(42722391-42722471)
chr4 (33-105)||(46108715-46108787)
[»] scaffold0016 (1 HSPs)
scaffold0016 (21-105)||(8716-8800)
[»] chr3 (40 HSPs)
chr3 (7-114)||(23511560-23511667)
chr3 (28-105)||(47471845-47471922)
chr3 (12-114)||(47219142-47219244)
chr3 (7-114)||(26361974-26362081)
chr3 (36-114)||(54261248-54261326)
chr3 (33-114)||(3136701-3136782)
chr3 (21-114)||(7328851-7328943)
chr3 (12-105)||(29127917-29128010)
chr3 (12-105)||(30767263-30767356)
chr3 (35-108)||(33251683-33251756)
chr3 (21-101)||(8164560-8164640)
chr3 (22-122)||(29135921-29136021)
chr3 (21-104)||(15320193-15320276)
chr3 (13-108)||(52168583-52168678)
chr3 (35-122)||(55069678-55069765)
chr3 (33-103)||(10040575-10040645)
chr3 (11-105)||(35315953-35316047)
chr3 (34-119)||(35923625-35923710)
chr3 (21-114)||(45877461-45877554)
chr3 (46-114)||(3507540-3507608)
chr3 (21-105)||(30045828-30045912)
chr3 (36-120)||(40660328-40660412)
chr3 (21-105)||(41630528-41630612)
chr3 (50-122)||(43330731-43330803)
chr3 (50-114)||(49021210-49021274)
chr3 (21-101)||(49198358-49198438)
chr3 (21-100)||(26043819-26043898)
chr3 (21-120)||(50405604-50405703)
chr3 (22-99)||(3755578-3755655)
chr3 (25-114)||(13893937-13894026)
chr3 (52-105)||(22909821-22909874)
chr3 (33-122)||(24506647-24506736)
chr3 (46-103)||(25294992-25295049)
chr3 (21-114)||(28572218-28572311)
chr3 (25-58)||(37092568-37092601)
chr3 (48-105)||(45402367-45402424)
chr3 (34-82)||(11687148-11687196)
chr3 (46-114)||(29762162-29762230)
chr3 (54-122)||(44064584-44064652)
chr3 (46-114)||(53649759-53649827)
[»] scaffold0170 (1 HSPs)
scaffold0170 (22-104)||(9856-9938)
[»] chr1 (33 HSPs)
chr1 (28-105)||(11397905-11397982)
chr1 (34-122)||(50094925-50095013)
chr1 (7-108)||(32150935-32151036)
chr1 (21-105)||(5855530-5855614)
chr1 (21-105)||(17642020-17642104)
chr1 (12-122)||(15465964-15466074)
chr1 (11-108)||(10336514-10336611)
chr1 (21-122)||(30927726-30927827)
chr1 (22-114)||(33004022-33004114)
chr1 (28-103)||(9659197-9659272)
chr1 (12-114)||(8763990-8764092)
chr1 (21-99)||(10422796-10422874)
chr1 (12-114)||(26325811-26325913)
chr1 (28-121)||(21849205-21849298)
chr1 (21-114)||(26660146-26660238)
chr1 (21-114)||(41663863-41663956)
chr1 (21-114)||(49078122-49078215)
chr1 (46-114)||(4581689-4581757)
chr1 (46-122)||(33498838-33498914)
chr1 (34-101)||(12036764-12036831)
chr1 (21-120)||(38859117-38859216)
chr1 (12-114)||(16263544-16263646)
chr1 (12-114)||(43959828-43959930)
chr1 (36-114)||(45361889-45361967)
chr1 (12-82)||(48798109-48798179)
chr1 (64-121)||(5504082-5504139)
chr1 (37-114)||(10172978-10173055)
chr1 (36-105)||(10507721-10507790)
chr1 (21-114)||(35211179-35211272)
chr1 (21-105)||(32142862-32142946)
chr1 (21-105)||(34719784-34719868)
chr1 (45-101)||(45726453-45726509)
chr1 (28-88)||(47312932-47312992)
[»] chr6 (22 HSPs)
chr6 (12-108)||(8888884-8888980)
chr6 (22-100)||(12606442-12606520)
chr6 (21-114)||(21898659-21898752)
chr6 (21-105)||(29333154-29333237)
chr6 (21-105)||(29444780-29444864)
chr6 (21-114)||(5253229-5253322)
chr6 (33-121)||(13391309-13391397)
chr6 (12-114)||(13036010-13036112)
chr6 (36-114)||(30788859-30788937)
chr6 (37-114)||(9633631-9633708)
chr6 (12-105)||(34954634-34954727)
chr6 (34-114)||(3601108-3601188)
chr6 (38-105)||(11142631-11142698)
chr6 (64-115)||(15643839-15643890)
chr6 (12-114)||(19089500-19089602)
chr6 (21-114)||(6606103-6606196)
chr6 (31-108)||(10311481-10311558)
chr6 (21-97)||(3587968-3588044)
chr6 (37-105)||(5029844-5029912)
chr6 (36-104)||(8611990-8612058)
chr6 (46-114)||(14783426-14783494)
chr6 (46-114)||(31129213-31129281)
[»] scaffold0316 (1 HSPs)
scaffold0316 (12-114)||(1620-1722)
[»] chr8 (19 HSPs)
chr8 (28-114)||(4479302-4479388)
chr8 (33-105)||(14846598-14846670)
chr8 (37-121)||(18374037-18374121)
chr8 (21-108)||(6100483-6100570)
chr8 (36-105)||(10927632-10927701)
chr8 (21-104)||(8141113-8141196)
chr8 (46-104)||(3418529-3418587)
chr8 (22-104)||(43032913-43032995)
chr8 (21-114)||(8997550-8997643)
chr8 (21-104)||(6042832-6042915)
chr8 (35-97)||(583837-583899)
chr8 (44-122)||(3692867-3692945)
chr8 (28-114)||(15884562-15884648)
chr8 (21-114)||(2467124-2467217)
chr8 (21-114)||(16291209-16291302)
chr8 (64-108)||(25848230-25848274)
chr8 (21-101)||(33401818-33401898)
chr8 (21-105)||(43027316-43027400)
chr8 (21-121)||(44893277-44893377)
[»] scaffold0291 (1 HSPs)
scaffold0291 (21-114)||(6865-6958)
[»] scaffold0010 (1 HSPs)
scaffold0010 (22-114)||(155717-155809)
[»] scaffold0009 (1 HSPs)
scaffold0009 (12-114)||(42838-42940)
[»] scaffold0384 (1 HSPs)
scaffold0384 (21-105)||(5983-6066)
[»] scaffold0086 (1 HSPs)
scaffold0086 (21-88)||(26193-26260)
[»] scaffold0006 (1 HSPs)
scaffold0006 (21-114)||(68527-68617)
[»] scaffold0005 (2 HSPs)
scaffold0005 (42-105)||(250040-250103)
scaffold0005 (44-122)||(219402-219480)
[»] scaffold0209 (1 HSPs)
scaffold0209 (35-97)||(12597-12659)
[»] scaffold0041 (1 HSPs)
scaffold0041 (33-114)||(25107-25188)
[»] scaffold0004 (1 HSPs)
scaffold0004 (25-122)||(7833-7930)
[»] scaffold0002 (1 HSPs)
scaffold0002 (25-102)||(319436-319513)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 308 - 375
Target Start/End: Complemental strand, 31596129 - 31596062
Alignment:
Q  308 cgcgagacaaataattgaactatgaaatcatattcgcttcaaatttacaaagttaattcttaaaattc 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31596129 cgcgagacaaataattgaactatgaaatcatattcgcttcaaatttacaaagttaattcttaaaattc 31596062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 6358249 - 6358157
Alignment:
Q  22 ttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||| |||||||||   ||||||||||||| ||| |||||||||||| |||||| ||||| |||| |||||||||||||| |||||    
T  6358249 ttcgatttccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcgaaaaccggt 6358157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 39201594 - 39201514
Alignment:
Q  34 ggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||||||||||||||||| || ||| |||||||||||| |||||| ||||| |||||||||||||||| || |||||    
T  39201594 ggggaacaatgtttggccagtgtgcatgcctctacgcatgagccggattagtcgttcacctttggtgggtcggaaaccggt 39201514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 22593141 - 22593225
Alignment:
Q  20 agttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||| ||| ||||||||| ||| ||||||||||| ||| |||||||||||| |||||| ||||| ||||||||||||||||    
T  22593141 agttcgattcccagggggaacaacgtt-ggccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcg 22593225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 10026715 - 10026631
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||  || ||||||||| ||||||||||||||| ||| |||||||||||| |||||| ||||  ||||||||||||||||    
T  10026715 gttcgattctcagggggaacaacgtttggccagtgcgcatgcctctacgcatgagccggattagtcgaccacctttggtgggtcg 10026631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 331508 - 331590
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggt 103  Q
    |||||||| ||| |||||||||   ||||||||||||| |||||||||||||||| |||||| ||||  ||||||||||||||    
T  331508 gttcgattcccagggggaacaacacttggccagtgcgcatgcttctacgcatgagccggattagtcgcccacctttggtgggt 331590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 37560171 - 37560273
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    ||||| || ||||||||  |||||||||||| |||||| |||||||| ||| |||||||| ||| ||||||  |||| |||||||| |||||||||| ||    
T  37560171 gaataccaggttcgattctcaaggggaacaacgtttggtcagtgcgcatgcctctacgcacgagccggattaatcgtccacctttgatgggtcgaaaacc 37560270  T
Q  112 ggt 114  Q
    |||    
T  37560271 ggt 37560273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 24179587 - 24179676
Alignment:
Q  33 aggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    |||||||||| ||||||||||||| | ||| |||||||||||| |||||| ||||| || |||||||||||  ||| ||||| |||||||    
T  24179587 aggggaacaacgtttggccagtgcacatgcctctacgcatgagccggattagtcgtccatctttggtgggttaaaaaccggtgcaaaagc 24179676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 25540503 - 25540410
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| | | ||||||||| | ||||||||||||| ||| |||||||| ||| |||||| ||||| |||||||||||||||| || |||||    
T  25540503 gttcgattcctagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgtccacctttggtgggtcggaaaccggt 25540410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 38005409 - 38005489
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    |||||||| ||||||||||||| | ||||||||||||| ||| ||||| |||||| |||||| ||||  ||||||||||||    
T  38005409 gttcgattcccaaggggaacaacgcttggccagtgcgcatgcctctacacatgagccggattagtcgcccacctttggtgg 38005489  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 7787063 - 7787162
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    |||||||||||| ||||||||||  ||||||||| ||| ||| |||||||| ||| |||||| ||||  || ||||||||| |||||| ||||| |||||    
T  7787063 gttcgatttccagggggaacaatacttggccagtacgcatgcctctacgcacgagccggattagtcgcccatctttggtggatcgaaaaccggtgcaaaa 7787162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 38962770 - 38962853
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    ||||||||| || | ||||||| | ||||||||||||| ||| |||||||||||  |||||| ||||| |||||||||||||||    
T  38962770 gttcgattttcaggaggaacaacgcttggccagtgcgcatgcctctacgcatgaaccggattagtcgtccacctttggtgggtc 38962853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 7747296 - 7747374
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||| |||||||||||| || ||| |||||||||||| |||||| ||||| ||||||| |||||||| || |||||    
T  7747296 ggaacaacgtttggccagtgtgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcggaaaccggt 7747374  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 26805326 - 26805404
Alignment:
Q  44 gtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||||||||||| | ||| ||||||||||||||||||| ||||  |||||||||||| |||||| ||| | |||||||    
T  26805326 gtttggccagtgcacatgcctctacgcatgagtcggattagtcgcccacctttggtggctcgaaaaccgatgcaaaagc 26805404  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 41220642 - 41220735
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| | ||||||| | ||||||||||||| ||| |||||||||||| || ||| ||||| ||||||| |||||||| || |||||    
T  41220642 gttcgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccgaattagtcgttcacctttagtgggtcggaaaccggt 41220735  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 31596541 - 31596477
Alignment:
Q  11 agaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgag 75  Q
    ||||||||| |||| |||| || ||||||||||||||||||||||| | | ||||||||||||||    
T  31596541 agaatatcaggttctattttcagggggaacaatgtttggccagtgcacatacttctacgcatgag 31596477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 39806984 - 39806904
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    |||||||| ||||| | ||||| ||||||||||||||| ||| ||||| || |||||||||| ||| | ||||||||||||    
T  39806984 gttcgattcccaagagaaacaacgtttggccagtgcgcatgcctctacacacgagtcggattagtcatccacctttggtgg 39806904  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 42770737 - 42770649
Alignment:
Q  34 ggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||||||| | ||||||||||||| ||| ||| |||| ||| ||||||  |||| ||||||||||||||||||| ||| | |||||||    
T  42770737 ggggaacaacgcttggccagtgcgcatgcctcttcgcacgagccggattaatcgtccacctttggtgggtcgaaaaccgatgcaaaagc 42770649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 18649110 - 18649043
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggt 103  Q
    |||||||| ||||| |||||||| ||| ||||||||||||||||||| ||||  ||| ||||||||||    
T  18649110 ggaacaatatttgggcagtgcgcatgcctctacgcatgagtcggattagtcgctcacttttggtgggt 18649043  T

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Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 3643971 - 3643905
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtggg 102  Q
    ||||||| | ||||||||||||| ||| ||||||||||||  ||||| ||||| |||||||||||||    
T  3643971 ggaacaacgcttggccagtgcgcatgcctctacgcatgagctggattagtcgtccacctttggtggg 3643905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 10669615 - 10669692
Alignment:
Q  37 gaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||| | ||||||||||||| ||  |||||||| ||||||||||  |||| |||||||||||||||| || |||||    
T  10669615 gaacaacgcttggccagtgcgcatgtctctacgcacgagtcggattaatcgttcacctttggtgggtcggaaaccggt 10669692  T

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Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 12455317 - 12455410
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||||||| ||| ||||| | || |||||||||| ||| |||||||| ||| |||||| ||||  |||| ||||||||||| || |||||    
T  12455317 gttcgatttccaggggaaacaacgcttagccagtgcgcatgcctctacgcacgagccggattagtcgctcaccattggtgggtcggaaaccggt 12455410  T

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Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 16325602 - 16325695
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| |||||||||   |||||||||| || ||| |||||||||||| | |||| ||||| |||| ||||||||||| || |||||    
T  16325602 gttcgattcccagggggaacaacacttggccagtgtgcatgcctctacgcatgagccagattagtcgtccaccattggtgggtcggaaaccggt 16325695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 44139491 - 44139584
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| ||||||||| | ||||||||||||| ||| |||||||| ||| |||||| ||||  ||||  |||||||||| || |||||    
T  44139491 gttcgattcccagggggaacaacgcttggccagtgcgcgtgcctctacgcacgagccggattagtcgcccaccaatggtgggtcggaaaccggt 44139584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 10046575 - 10046492
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||  |||||| ||||| ||||| | ||||||| ||| |||||||||||| |||||| ||||  ||||||||||||||||    
T  10046575 gttcgattctcaagggaaacaacgtttgac-agtgcgcatgcctctacgcatgagccggattagtcgaccacctttggtgggtcg 10046492  T

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Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 12864232 - 12864324
Alignment:
Q  22 ttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||| |||||||||   |||| |||||||| ||| ||| |||||||| | |||| ||||| |||| ||||||||||| || |||||    
T  12864232 ttcgatttccagggggaacaacacttggtcagtgcgcatgcctctgcgcatgagccagattagtcgtccaccattggtgggtcggaaaccggt 12864324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 31596413 - 31596365
Alignment:
Q  131 tatttgtcatcgatacataaaa-gaaacagaacaaatatttgtcatttg 178  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  31596413 tatttgtcattgatacataaaaagaaacagaagaaatatttgtcatttg 31596365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 34356213 - 34356297
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||||||| |||||||||   |||| |||||||| ||| |||| ||||||| ||||||  ||||||||| ||| |||||||    
T  34356213 gttcgatttccagggggaacaacacttggtcagtgcgcatgcctctatgcatgagccggattaatcgtgcaccattgatgggtcg 34356297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 8410128 - 8410231
Alignment:
Q  11 agaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagc 110  Q
    ||||||||  |||||||| ||| |||||||||   ||||||||||||| ||| |||||||| ||| |||||| ||||  ||| ||||| |||||| || |    
T  8410128 agaatatcgggttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcacgagccggattagtcgcccacttttggggggtcggaaac 8410227  T
Q  111 cggt 114  Q
    ||||    
T  8410228 cggt 8410231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 31580312 - 31580273
Alignment:
Q  131 tatttgtcatcgatacataaaagaaacagaacaaatattt 170  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  31580312 tatttgtcattgatacataaaagaaacacaacaaatattt 31580273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 45263766 - 45263679
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    |||||||| |||  |||||||| | ||||||||||||| ||| |||||||| ||| ||||||  |||  || ||||||||||||||||    
T  45263766 gttcgattcccagagggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattaatcgctcatctttggtgggtcgaaa 45263679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 1773700 - 1773650
Alignment:
Q  64 tctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||||| ||||| ||||| |||| |||||||||||||| |||||    
T  1773700 tctacgcatgagttggattagtcgtccaccattggtgggtcgaaaaccggt 1773650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 10823082 - 10823160
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||| | ||||||||||||| ||| |||||||| ||| |||||| ||||  ||||||| |||||||| || |||||    
T  10823082 ggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgcccaccttttgtgggtcggaaaccggt 10823160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 13026495 - 13026449
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggatt 82  Q
    ||||||||| ||||||||||||| ||| |||||||||||| ||||||    
T  13026495 ggaacaatgattggccagtgcgcatgcctctacgcatgagccggatt 13026449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 31596293 - 31596259
Alignment:
Q  249 taatgtacgtgaagaaaaaatttctttaattaata 283  Q
    ||||||| |||||||||||||||||||||||||||    
T  31596293 taatgtatgtgaagaaaaaatttctttaattaata 31596259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 11069876 - 11069969
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||| || |||||||| | | ||||||||| ||||||||||||||| | | |||||||| |||  | ||| ||||| |||| |||||||||||    
T  11069876 gaataccaggttcgattccgagggggaacaacgtttggccagtgcgcatacctctacgcacgagctgaattagtcgtccaccgttggtgggtcg 11069969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 18902629 - 18902536
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| ||||||||| | ||| ||||||||| ||  |||||||| ||| | |||| ||||  |||||||||||||||| || |||||    
T  18902629 gttcgattcccacggggaacaacgcttgaccagtgcgcgtgtctctacgcacgagccagattagtcgcccacctttggtgggtcggaaaccggt 18902536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 35946752 - 35946829
Alignment:
Q  28 ttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||| |||||||||| | ||||||| || || ||| |||||||| ||| |||||| ||||| |||| |||||||||||    
T  35946752 ttcctaggggaacaacgcttggccattgtgcatgcctctacgcacgagccggattagtcgtccaccattggtgggtcg 35946829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 34346361 - 34346293
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||||| || ||| |||||||||||||| ||||  |||  |||||||||||||||| || |||||    
T  34346361 ttggccagtgtgcatgcctctacgcatgagtcagattaatcgctcacctttggtgggtcggaaaccggt 34346293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 41032005 - 41031921
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| ||| |||||||||   |||||||||| || ||| |||||||| ||| |||||| |||   ||||||||||||||||    
T  41032005 gttcgattcccagggggaacaacacttggccagtgtgcatgcctctacgcacgagccggattagtcacccacctttggtgggtcg 41031921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 40117414 - 40117516
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    ||||||| | ||||||||||| ||||||||| | ||||||||||||| ||| |||||||||||| ||||||  |||| |||||||||||| |||||| ||    
T  40117414 gaatatcgaattcgatttccagggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattaatcgttcacctttggtggatcgaaaacc 40117513  T
Q  112 ggt 114  Q
    |||    
T  40117514 ggt 40117516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 9805012 - 9805096
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| ||| ||||||||| | ||||||||||||| ||| |||||||||||| |||||| ||||| ||||||||||||||||    
T  9805012 gttcgattcccagggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcg 9805096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 23383665 - 23383749
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| ||| ||||||||| | ||||||||||||||||| ||||||||||||  ||||| ||||| ||||||||||||||||    
T  23383665 gttcgattcccagggggaacaacgcttggccagtgcgcttgcctctacgcatgagctggattagtcgtccacctttggtgggtcg 23383749  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 42086335 - 42086428
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| ||||||||| | ||| ||||||||| ||| |||||||||||| |||||| ||||| |||||||||||||||| || |||||    
T  42086335 gttcgattcccagggggaacaacgcttgaccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcggaaaccggt 42086428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 24463992 - 24463885
Alignment:
Q  14 atatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccgg 113  Q
    |||||| ||||||||| ||||| |||||| | ||||||||||||| ||| |||| ||| ||| |||||| ||||  |||||||  |||||||||| ||||    
T  24463992 atatcaggttcgattttcaaggcgaacaacgattggccagtgcgcatgcctctatgcacgagccggattagtcgcccacctttactgggtcgaaaaccgg 24463893  T
Q  114 tacaaaag 121  Q
    | ||||||    
T  24463892 tgcaaaag 24463885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 9168337 - 9168251
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||||| | ||||||||||||| | | |||||||||||| |||||| ||||| ||||||| |||||||||||  |||| |||||||    
T  9168337 ggaacaacgcttggccagtgcgcatacctctacgcatgagccggattagtcgtccacctttagtgggtcgaaaatcggtgcaaaagc 9168251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 14974433 - 14974343
Alignment:
Q  11 agaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    ||||||||  ||||||||   |||||||||||  |||||||||||| | ||| |||||||||||| |||||| ||||| ||||||||||||    
T  14974433 agaatatcgggttcgattctaaaggggaacaacatttggccagtgcacatgcctctacgcatgagccggattagtcgtccacctttggtgg 14974343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 1538439 - 1538532
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| |||||||||   ||||||||||||| ||| |||||||||||| ||||||  |||| |||| ||||||||||| || |||||    
T  1538439 gttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattaatcgtccaccattggtgggtcggaaaccggt 1538532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 3653997 - 3653912
Alignment:
Q  37 gaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    |||||| | ||| ||||||||| ||| |||||||| ||| |||||| ||||| |||||||||||| |||||| ||||| |||||||    
T  3653997 gaacaacgcttgaccagtgcgcatgcctctacgcacgaggcggattagtcgtccacctttggtggatcgaaaaccggtgcaaaagc 3653912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 39099853 - 39099777
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||||||||| | ||| |||||||||||| |||||| ||||  |||||||||||||||| || ||||| |||||||    
T  39099853 ttggccagtgcacatgcctctacgcatgagccggattagtcgcccacctttggtgggtcggaaaccggtgcaaaagc 39099777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 20255406 - 20255461
Alignment:
Q  50 ccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||| ||| ||||||||||||||||||| ||||| ||||||||||| ||||    
T  20255406 ccagtgcgcatgcctctacgcatgagtcggattagtcgtccacctttggtgagtcg 20255461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 14588725 - 14588623
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    |||||||  ||||||||| || | |||| || | ||| ||||||||| ||| |||||||||||| |||||| ||||| ||||||||||| | ||||| ||    
T  14588725 gaatatcgggttcgattttcaggaggaataacgcttgaccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgagccgaaaacc 14588626  T
Q  112 ggt 114  Q
    |||    
T  14588625 ggt 14588623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 19572736 - 19572814
Alignment:
Q  25 gatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggt 103  Q
    |||| ||| |||||||||   ||||||||||||| ||| |||||||||||| |||||| ||||| |||| |||||||||    
T  19572736 gattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgttcaccattggtgggt 19572814  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 21375373 - 21375435
Alignment:
Q  35 gggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttg 97  Q
    ||||||||  |||| ||||||||| ||||||||||||||||||||||| ||||| || |||||    
T  21375373 gggaacaacatttgaccagtgcgcatgcttctacgcatgagtcggattagtcgtccatctttg 21375435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 5732019 - 5731926
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| | ||||||| | ||||||||||||| ||| |||||| ||||| | |||| ||||| ||||||| |||||||| || |||||    
T  5732019 gttcgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgtatgagccagattagtcgttcacctttagtgggtcggaaaccggt 5731926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 8513527 - 8513620
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| | | ||| ||||||| ||||||||||| | ||| |||||||| ||| | |||| ||||| |||||||||||||||| || |||||    
T  8513527 gttcgattcctaggggaaacaatgcttggccagtgcacatgcctctacgcacgagccagattagtcgtccacctttggtgggtcggaaaccggt 8513620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 35813077 - 35812996
Alignment:
Q  41 aatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    |||| ||| ||||||||| ||  ||||| ||||||||||||| ||||| ||||||||  | ||||||| |||||||||||||    
T  35813077 aatgcttgaccagtgcgcatgtctctacacatgagtcggattagtcgtccacctttgaagtgtcgaaaaccggtacaaaagc 35812996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 41163552 - 41163475
Alignment:
Q  28 ttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||| |||||||||| ||||||||||||| | ||  ||||||||||||  ||||| ||||| ||||||| ||||||||    
T  41163552 ttcccaggggaacaacgtttggccagtgcacatgtctctacgcatgagctggattagtcgtccaccttttgtgggtcg 41163475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 42861326 - 42861233
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||  |||| |||||| |||| |||||   ||||||||||||| ||| |||||||||||| ||||||  |||| |||| |||||||||||    
T  42861326 gaatatcgggttcaatttcccagggaaacaacacttggccagtgcgcatgcctctacgcatgagccggattaatcgtccaccattggtgggtcg 42861233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 9812895 - 9812963
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    ||||||| | |||||||||| || |||||||||||||||  |||||| ||||  |||||||||||||||    
T  9812895 ggaacaacgcttggccagtgtgcatgcttctacgcatgaaccggattagtcgcccacctttggtgggtc 9812963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 12081916 - 12082000
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||  || ||||||||| | ||||||||||||| ||| |||||||| ||| || ||| ||||| ||||||||||| ||||    
T  12081916 gttcgattctcagggggaacaacgcttggccagtgcgcatgcatctacgcacgagccgaattagtcgtccacctttggtgagtcg 12082000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 38897817 - 38897738
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    |||||||||||| ||||||||| | ||||||||||||| ||| |||||||| ||| |||||| || |  ||||||||||||    
T  38897817 gttcgatttcca-ggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagttgcccacctttggtgg 38897738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 22655256 - 22655170
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    |||||||| ||| ||| |||||||||||  ||||| || ||| ||||||||| |||| |||| ||||| ||||||| |||||||||||    
T  22655256 gttcgattcccaggggaaacaatgtttgatcagtgtgcatgcctctacgcataagtcagattagtcgtccaccttt-gtgggtcgaaa 22655170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 7308472 - 7308370
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    |||||||  |||||||| ||| ||||||||| | |||| |||||| | ||| |||||||||||| |||||| ||||  |||||||| ||| || ||| ||    
T  7308472 gaatatcgggttcgattcccagggggaacaacgcttgggcagtgcacatgcctctacgcatgagccggattagtcgctcacctttgatggatcaaaaacc 7308373  T
Q  112 ggt 114  Q
    |||    
T  7308372 ggt 7308370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 11845900 - 11845846
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgag 75  Q
    |||||||||| | ||||||||| ||||||||||||||| ||| |||||| |||||    
T  11845900 gttcgatttcgagggggaacaacgtttggccagtgcgcatgcctctacgtatgag 11845846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 20525837 - 20525939
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    |||||||  |||||||| ||| | |||||||   || |||||||||| ||| |||||||||||| |||||| ||||| |||| ||||||| ||| || ||    
T  20525837 gaatatcgggttcgattcccaggtggaacaacacttcgccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtggatcggaaacc 20525936  T
Q  112 ggt 114  Q
    |||    
T  20525937 ggt 20525939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 20682712 - 20682634
Alignment:
Q  25 gatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggt 103  Q
    |||||||| ||||||||| | ||||||||||||| ||| |||||||| ||| ||||||  |||  ||||||| ||||||    
T  20682712 gatttccagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattaatcgaccacctttagtgggt 20682634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 5079343 - 5079431
Alignment:
Q  25 gatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||||||||  | |||| || ||||| |||||||||||| ||| |||||| ||||  |||||||||| |||||||| |||||    
T  5079343 gatttccagggggaacagcgcttggtcaatgcgcatgcttctacgcacgagccggattagtcgcccacctttggt-ggtcgaaaaccggt 5079431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 25452945 - 25453033
Alignment:
Q  33 aggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    |||||||||||||||| |||||| || ||| |||||||| ||| |||||| ||||  || |||| || |||||||| ||||| |||||||    
T  25452945 aggggaacaatgtttgaccagtgtgcatgcctctacgcacgagccggattagtcg-ccaactttagtcggtcgaaaaccggtgcaaaagc 25453033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 30349591 - 30349668
Alignment:
Q  25 gatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtggg 102  Q
    |||||| | ||||||||||| ||||||||||||| ||| |||| |||||||  | ||| ||||| |||||| ||||||    
T  30349591 gatttctagggggaacaatgattggccagtgcgcatgcctctatgcatgagctgaattagtcgtccaccttaggtggg 30349668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 12705037 - 12705105
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    ||||||| | ||| |||||| || |||||||||||||||  |||||| ||||  |||||||||||||||    
T  12705037 ggaacaacgcttgaccagtgtgcatgcttctacgcatgaaccggattagtcgcccacctttggtgggtc 12705105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 12766154 - 12766222
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    ||||||||| |||||||||| || ||| |||||||||||  | |||| ||||  |||||||||||||||    
T  12766154 ggaacaatgcttggccagtgtgcatgcctctacgcatgaaccagattagtcgcccacctttggtgggtc 12766222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 25950646 - 25950606
Alignment:
Q  68 cgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    |||||||| |||||| ||||| |||||||||||||||||||    
T  25950646 cgcatgagccggattagtcgtccacctttggtgggtcgaaa 25950606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 43862071 - 43861978
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| ||||||||| ||||||||||||||| ||| |||||||||||| |||||| ||| | |||||||||||| |||||| |||||    
T  43862071 gttcgattcccagggggaacaacgtttggccagtgcgcatgcctctacgcatgagccggattagtcattcacctttggtggatcgaaaaccggt 43861978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38578975 - 38578873
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    |||||||  |||||||| ||| ||||||||| | ||||||||||||| ||| |||||||||||| |||||| ||||  |||||||||||||||| || ||    
T  38578975 gaatatcgggttcgattcccagggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcccacctttggtgggtcggaaacc 38578876  T
Q  112 ggt 114  Q
    |||    
T  38578875 ggt 38578873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 48804693 - 48804786
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| |||||||||||||   ||||||||||||| ||| |||||||||||| |||||| ||||| |||| ||||||||||| || |||||    
T  48804693 gttcgattcccaaggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcggaaaccggt 48804786  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 13095868 - 13095969
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    |||| ||| ||| |||||||||   ||||||||||||| ||| |||||||||||| |||||| ||||  |||||||||||||||| || ||||| |||||    
T  13095868 gttctattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgctcacctttggtgggtcggaaaccggtgcaaaa 13095967  T
Q  121 gc 122  Q
    ||    
T  13095968 gc 13095969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 48244455 - 48244362
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||| ||||| ||||||||||||| |||  ||||||| |||| |||||||||||| |||||| ||||  |||||||||||| |||||| |||||    
T  48244455 gttcaatttctaaggggaacaatgcttgatcagtgcgtttgcctctacgcatgagccggattagtcgctcacctttggtggatcgaaaaccggt 48244362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 23658180 - 23658272
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    ||||||| ||||||||||||| ||||||||| | |||||||||| || ||| ||||| || ||| |||||| ||||| || ||||||||||||    
T  23658180 gaatatccagttcgatttccagggggaacaacgcttggccagtgtgcatgcctctacacacgagccggattagtcgtccatctttggtgggtc 23658272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 27028289 - 27028382
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||||||| |||||||||   ||||||||||||| ||| ||||| ||||||  ||||| ||||  |||||||||||||||| || |||||    
T  27028289 gttcgatttccagggggaacaacacttggccagtgcgcatgcctctacacatgagctggattagtcgctcacctttggtgggtcggaaaccggt 27028382  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 39420847 - 39420948
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    |||||| | |||| |||||||| | ||||||||||||| ||| |||||||||||| |||||| |||||  ||||||| |||| || || ||||| |||||    
T  39420847 gttcgaatcccaaagggaacaacgcttggccagtgcgcgtgcctctacgcatgagccggattagtcgtctacctttgatgggccggaaaccggtgcaaaa 39420946  T
Q  121 gc 122  Q
    ||    
T  39420947 gc 39420948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 17748481 - 17748397
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| ||| ||||||||| | ||||||||||||| ||| |||||| | ||| |||||| ||||| |||||||| |||||||    
T  17748481 gttcgattcccagggggaacaacgcttggccagtgcgcatgcctctacgtacgagccggattagtcgtccacctttgttgggtcg 17748397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 27875162 - 27875094
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||| | ||| ||||||||||||||| ||| ||||| ||||||| ||||||||||| |||||    
T  27875162 ttggccagtgcacatgcctctacgcatgagtcgcattagtcgtccacctttagtgggtcgaaaaccggt 27875094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 4195302 - 4195219
Alignment:
Q  20 agttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggt 103  Q
    ||||||||||||| | |||||||  |||||| ||||||| ||| |||||||||||| |||||| | ||| |||| |||||||||    
T  4195302 agttcgatttccaggaggaacaacatttggctagtgcgcatgcctctacgcatgagccggattagccgtccaccattggtgggt 4195219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 14650317 - 14650420
Alignment:
Q  11 agaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagc 110  Q
    ||||||||  |||||||||||| | ||||||||| ||| |||||||   ||| |||||||||||| ||| || ||||  |||||||||||||| |||| |    
T  14650317 agaatatcgggttcgatttccaggaggaacaatgcttgaccagtgcatatgcctctacgcatgagccgggttagtcgctcacctttggtgggttgaaaac 14650416  T
Q  111 cggt 114  Q
    ||||    
T  14650417 cggt 14650420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 22973977 - 22974060
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    ||||||||  || ||||||||| | |||||||||| || ||| |||||||||||| | |||| ||||| |||||||||||||||    
T  22973977 gttcgattctcagggggaacaacgcttggccagtgtgcatgcgtctacgcatgagccagattagtcgtccacctttggtgggtc 22974060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 39474950 - 39475037
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    |||||||| | | ||||||||| | |||| |||||||| | | |||||||||||| |||||| ||||| ||||||| |||||||||||    
T  39474950 gttcgattcctatggggaacaacgcttggtcagtgcgcatacctctacgcatgagccggattagtcgtccacctttagtgggtcgaaa 39475037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 8734794 - 8734692
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    |||||||| ||||||||||   ||||||||||| |||| |||||||| ||| || ||||| ||| | |||| ||||  |||||||||||||||| || ||    
T  8734794 gaatatcaggttcgatttcttgggggaacaatgcttgggcagtgcgcatgcctcaacgcacgagccagattagtcgcccacctttggtgggtcggaaacc 8734695  T
Q  112 ggt 114  Q
    |||    
T  8734694 ggt 8734692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 1605951 - 1606044
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||||||| ||||||||| | ||||||||||| | ||| |||| || |||| |||||| ||||  |||||||||||| ||| || |||||    
T  1605951 gttcgatttccagggggaacaacgcttggccagtgcacatgcctctaggcttgagccggattagtcgcccacctttggtggatcggaaaccggt 1606044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 34659236 - 34659329
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||  |||||||||||| | ||| ||||||||| ||| |||||||| ||| |||||| ||||  |||| |||||| ||||||| |||||    
T  34659236 gttcgattctcaaggggaacaacgcttgaccagtgcgcatgcctctacgcacgagccggattagtcgcccaccattggtgtgtcgaaaaccggt 34659329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 47341885 - 47341970
Alignment:
Q  20 agttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||| ||| |||||||||   ||||||||||||| ||| |||||||| |||  ||||| ||||| |||| |||||||||||    
T  47341885 agttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcacgagcaggattggtcgttcaccattggtgggtcg 47341970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 28396227 - 28396159
Alignment:
Q  53 gtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaag 121  Q
    |||||| ||| | |||||||||| |||||| |||||  ||||||||||||||| || ||||||||||||    
T  28396227 gtgcgcatgcctttacgcatgagccggattagtcgtctacctttggtgggtcggaaaccggtacaaaag 28396159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 42032106 - 42032190
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| ||| ||||||||| ||||||||||||| | | | |||||||||||| || ||| || || |||||||| |||||||    
T  42032106 gttcgattcccacggggaacaacgtttggccagtgcacatacatctacgcatgagccgaattagttgtccacctttgatgggtcg 42032190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 36619353 - 36619270
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    |||||||| ||| |||||||||   ||| |||||| || ||| |||||||||||| |||||| ||||| |||| ||||||||||    
T  36619353 gttcgattcccagggggaacaacacttgtccagtgtgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtc 36619270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 41945508 - 41945567
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||||||| ||| |||||||| ||| |||||| ||||| ||||||||||| ||||    
T  41945508 ttggccagtgcgcatgcctctacgcacgagccggattagtcgtccacctttggtgagtcg 41945567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 45697259 - 45697188
Alignment:
Q  51 cagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    |||||||| ||| ||||||||||||| || || ||||| |||||||||||||||| || || |||| |||||    
T  45697259 cagtgcgcatgcctctacgcatgagttgggttagtcgtccacctttggtgggtcggaaaccagtacgaaagc 45697188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 4228859 - 4228766
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    ||||| || ||||||||||||   ||||||| ||||||||||||| | |||  ||||||||||| |||||| ||||  |||| ||| ||||||||||    
T  4228859 gaataccaggttcgatttcca---ggaacaacgtttggccagtgcacatgcccctacgcatgagccggattagtcgcccaccattgatgggtcgaaa 4228766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 16802148 - 16802234
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||||| | ||||||||||||  ||| |||||||| ||| |||||| ||||  |||| |||||||||||||| | ||| |||||||    
T  16802148 ggaacaacgattggccagtgcgtatgcctctacgcacgagccggattagtcgctcaccattggtgggtcgaaaactggtgcaaaagc 16802234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 1797470 - 1797571
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    |||||||| ||| ||| ||||| | ||||||||||||| ||  |||||||| ||| |||| | ||||| || ||||| ||| |||||| ||||| |||||    
T  1797470 gttcgattcccaggggaaacaacgcttggccagtgcgcatgtctctacgcacgagccggactagtcgtccatctttgatggatcgaaaaccggtgcaaaa 1797569  T
Q  121 gc 122  Q
    ||    
T  1797570 gc 1797571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 10047975 - 10047882
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| |||||||||   |||||||||||||  || ||||||||||||  | ||| ||||| |||| ||||||||||| || |||||    
T  10047975 gttcgattcccagggggaacaacacttggccagtgcgcaggcctctacgcatgagcagaattagtcgtccaccattggtgggtcggaaaccggt 10047882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 18785679 - 18785772
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| | | |||||||||   ||||||||||||| ||| |||||||||||   ||||| ||||| ||||| |||||||||| || |||||    
T  18785679 gttcgattcctagggggaacaacacttggccagtgcgcatgcctctacgcatgaactggattagtcgttcacctctggtgggtcggaaaccggt 18785772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 23060697 - 23060767
Alignment:
Q  29 tccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    |||| ||||||||| ||||| ||| || || |||  |||||||||||||||||| ||||| ||||||||||||    
T  23060697 tccagggggaacaacgtttgaccaatgtgcatgc--ctacgcatgagtcggattagtcgttcacctttggtgg 23060767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 3353458 - 3353510
Alignment:
Q  45 tttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttg 97  Q
    |||||||||||||| ||| |||||||| ||| |||||| ||||| ||||||||    
T  3353458 tttggccagtgcgcatgcctctacgcacgagccggattagtcgtccacctttg 3353510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 5039474 - 5039418
Alignment:
Q  64 tctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    |||||||||||| |||||| ||||  |||||||||||| |||||| ||||| |||||    
T  5039474 tctacgcatgagccggattagtcgctcacctttggtggatcgaaaaccggtgcaaaa 5039418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 24983487 - 24983435
Alignment:
Q  52 agtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    ||||||| ||| |||||||||||| |||||| ||||| |||| ||||||||||    
T  24983487 agtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtc 24983435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 26423386 - 26423306
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    |||||||| ||| ||| ||||| | ||||||||||| | ||| |||||||| ||| | |||| ||||| ||||||||||||    
T  26423386 gttcgattcccaggggaaacaacgcttggccagtgcacctgcctctacgcacgagccagattagtcgttcacctttggtgg 26423306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 40272439 - 40272346
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||  |||||||||||| ||||||||| | ||||||||||||| ||| ||||||||| ||||||||| ||||| |||| |||||||||||    
T  40272439 gaatatcgggttcgatttccatggggaacaacgcttggccagtgcgcatgcctctacgcataagtcggatttgtcgttcaccattggtgggtcg 40272346  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 40780960 - 40780867
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||  |||||||||||| | |||| |||||||| ||| |||||||||||| |||||| ||||| |||||||||||||||| || |||||    
T  40780960 gttcgattctcaaggggaacaacgcttggtcagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcggaaaccggt 40780867  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 13073540 - 13073643
Alignment:
Q  11 agaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagc 110  Q
    |||||| | ||||||||| ||| ||||||||||||||||||||||||| | | |||||||||||  | |||| |||||  ||||||||||||||| || |    
T  13073540 agaataccgagttcgattcccatggggaacaatgtttggccagtgcgcatacctctacgcatgaaccagattagtcgtttacctttggtgggtcggaaac 13073639  T
Q  111 cggt 114  Q
    ||||    
T  13073640 cggt 13073643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 42722661 - 42722583
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||| | ||||||||||||| ||| |||||||||||| |||||| ||||| ||||||| ||||||||||| |||||    
T  42722661 ggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcgaaaaccggt 42722583  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 49260755 - 49260663
Alignment:
Q  30 ccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||||||||||| | ||||||||||||| ||| |||||||| ||| |||||| ||||  |||||||||||||||| ||  |||| |||||||    
T  49260755 ccaaggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgaccacctttggtgggtcggaaatcggtgcaaaagc 49260663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 7246731 - 7246652
Alignment:
Q  35 gggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| | ||||||||||||| ||| |||||||||||| |||||| ||||  |||||||||||||||| || |||||    
T  7246731 gggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcccacctttggtgggtcggaaaccggt 7246652  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 20532518 - 20532428
Alignment:
Q  11 agaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    |||||| | ||||||||||||| | ||||||| | ||||||||||||| ||| |||||||||||| |||||  ||||  ||||||||||||    
T  20532518 agaataccgagttcgatttccaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccggataagtcgcccacctttggtgg 20532428  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 21429304 - 21429406
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    |||||||  |||||||||  | ||||||||| |||| |||||||||| ||| |||||||| ||||| || | ||||| |||||||||||||||| || ||    
T  21429304 gaatatcgggttcgatttttagggggaacaacgtttagccagtgcgcatgcctctacgcacgagtcagactagtcgtccacctttggtgggtcggaaacc 21429403  T
Q  112 ggt 114  Q
    |||    
T  21429404 ggt 21429406  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 3159568 - 3159467
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    |||||| ||||| ||||||||| | ||||||||||||| ||| |||||||| ||| | |||| ||||  |||| ||||||||||| || ||||| |||||    
T  3159568 gttcgacttccagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccagattagtcgctcaccattggtgggtcggaaaccggtgcaaaa 3159469  T
Q  121 gc 122  Q
    ||    
T  3159468 gc 3159467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 16450312 - 16450405
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| ||||||||| | ||||||||||| | ||| |||||||||||| | |||| ||||| |||||||||| ||||| || |||||    
T  16450312 gttcgattcccagggggaacaacgcttggccagtgcacatgcctctacgcatgagccagattagtcgtccacctttggtaggtcggaaaccggt 16450405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 29895799 - 29895892
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| |||||||||   ||||||||||||| ||| |||||||||||| |||||| ||||| |||| ||||||| ||| || |||||    
T  29895799 gttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtggttcggaaaccggt 29895892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 53599072 - 53599165
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| | ||||||| ||||||||||||||| ||| |||||||||||| ||||||  |||| ||||||| |||| ||| || |||||    
T  53599072 gttcgattcccaggaggaacaacgtttggccagtgcgcatgcctctacgcatgagccggattaatcgttcacctttagtggatcggaaaccggt 53599165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 17080068 - 17080148
Alignment:
Q  34 ggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||| | ||||||||||||| ||| |||||||||||| |||||| ||||  |||||||| ||| |||||| |||||    
T  17080068 ggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcacacctttgatggatcgaaaaccggt 17080148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 5472922 - 5472860
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    ||||||||||||| ||| |||||||| ||| |||||| ||||  |||||||||||||||||||    
T  5472922 ttggccagtgcgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtcgaaa 5472860  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 4738630 - 4738723
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||||||| | ||||||| | || |||||||||| ||  ||||||||||||  | ||| ||||| |||||||||||||||| || |||||    
T  4738630 gttcgatttccaggaggaacaacgctttgccagtgcgcatgtctctacgcatgagctgaattagtcgtccacctttggtgggtcggaaaccggt 4738723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 8889034 - 8889127
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| | | |||||||||   |||| |||||||| ||  |||||||||||| |||||| ||||| |||||||||||||||| || |||||    
T  8889034 gttcgattcctagggggaacaacacttgggcagtgcgcatggctctacgcatgagccggattagtcgtccacctttggtgggtcggaaaccggt 8889127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 20354635 - 20354716
Alignment:
Q  7 tcgaagaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgt 88  Q
    ||||| |||| | |||| |||||||| || |||||| | ||||| ||||||| ||| ||||||||||||||||||| |||||    
T  20354635 tcgaaaaataccgagtttgatttccagggagaacaacgcttggctagtgcgcatgcctctacgcatgagtcggattagtcgt 20354716  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 36262852 - 36262783
Alignment:
Q  35 gggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    |||||||| | ||||||||||| | ||| |||||||| |||||||||| ||||  |||||||||||||||    
T  36262852 gggaacaacgcttggccagtgcacatgcctctacgcacgagtcggattagtcgcccacctttggtgggtc 36262783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 38166043 - 38166132
Alignment:
Q  25 gatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||| ||| ||||||||| | ||||||||||||| ||  |||||||| ||| |||||| ||||  |||||||||||||||| || |||||    
T  38166043 gattcccagggggaacaacgcttggccagtgcgcatggctctacgcacgagccggattagtcgcccacctttggtgggtcggaaaccggt 38166132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 52950085 - 52950178
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||  |||||||| ||| ||||||||| | ||||||||||||| ||  ||||| |||||  | |||| ||||| ||||||||||||||||    
T  52950085 gaatatcgggttcgattcccagggggaacaacgcttggccagtgcgcatgactctacacatgaaccagattagtcgtccacctttggtgggtcg 52950178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 1446838 - 1446910
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacc 93  Q
    |||||||| ||| |||||||||   ||||||||||||| ||| |||||||||||| |||||| ||||| ||||    
T  1446838 gttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccacc 1446910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 2559320 - 2559412
Alignment:
Q  22 ttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||| | | ||||||| | ||||||||||||| ||| ||||||||  || ||||||  |||| |||||||||||||||| || |||||    
T  2559320 ttcgatttctaggaggaacaacgcttggccagtgcgcatgcctctacgcacaagccggattactcgtccacctttggtgggtcggaaaccggt 2559412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 8064897 - 8064797
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    |||||||| |||||||||| ||   ||| ||||||||| ||| |||||||||||| |||||| ||||| |||| ||  | |||||||| ||||| |||||    
T  8064897 gttcgattcccaaggggaataacacttgaccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattaataggtcgaaaaccggtgcaaaa 8064798  T
Q  121 g 121  Q
    |    
T  8064797 g 8064797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 47078470 - 47078554
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| ||| ||||||||| | ||||||||||| | ||| |||||||| ||| |||||| ||||  |||| |||||||||||    
T  47078470 gttcgattcccagggggaacaacgcttggccagtgcacatgcctctacgcacgagccggattagtcgctcaccattggtgggtcg 47078554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 1940873 - 1940783
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| ||||||||| | ||||   |||||| ||| |||||||| ||| |||||| ||||  ||||||||||||||||||| |||||    
T  1940873 gttcgattcccagggggaacaacgcttgg---gtgcgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtcgaaaaccggt 1940783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 6779223 - 6779302
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtg 100  Q
    |||||||| ||| |||||||||    |||||||||||| ||| |||| ||||||| |||||| ||||| |||||||||||    
T  6779223 gttcgattcccagggggaacaacacctggccagtgcgcatgcctctatgcatgagccggattagtcgtccacctttggtg 6779302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 14124019 - 14124110
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggt 103  Q
    ||||| || |||||||| ||| |||||||||  |||||||||||||| ||| ||||| || ||| |||||| ||||  |||| |||||||||    
T  14124019 gaataccaggttcgattcccagggggaacaacatttggccagtgcgcatgcctctacacacgagccggattagtcgctcaccattggtgggt 14124110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 14567272 - 14567335
Alignment:
Q  42 atgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||||||||||| ||| |||||||| ||| |||||| ||||  | ||||||||||||||    
T  14567272 atgtttggccagtgcgcatgcctctacgcacgagccggattagtcgctcgcctttggtgggtcg 14567335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 17946513 - 17946588
Alignment:
Q  33 aggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    |||||||||||  ||| ||||||||| ||||||||| |||||||| |||| || || ||| ||||||| |||||||    
T  17946513 aggggaacaattcttgaccagtgcgcatgcttctacacatgagtcagattagttgtccacttttggtgagtcgaaa 17946588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 25406662 - 25406569
Alignment:
Q  24 cgatttccaaggggaacaatgtttggccagtgcgcttgct---tctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||| || ||| ||||||||||||||||||||||  ||   ||||||||||| || |||| ||||| |||||||| ||||||| || |||||    
T  25406662 cgattttcaggggtaacaatgtttggccagtgcgctgcctcgctctacgcatgaatcagattagtcgttcacctttgatgggtcggaaaccggt 25406569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 38168260 - 38168350
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggt 103  Q
    ||||| || |||||||| | ||| ||||||| | ||||||||||| | ||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  38168260 gaataccaggttcgattcctaagaggaacaacgcttggccagtgc-catgcctctacgcatgagccggattagtcgttcacctttagtgggt 38168350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 3507273 - 3507362
Alignment:
Q  11 agaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    ||||||||  |||||||| ||||||| ||||| | ||||| ||||||| ||| ||||| || ||| |||||| ||||| ||||||||||||    
T  3507273 agaatatcgggttcgattcccaaggg-aacaacgcttggctagtgcgcgtgcctctacacacgagccggattagtcgtccacctttggtgg 3507362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 14597976 - 14597898
Alignment:
Q  44 gtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||||||||||||| ||| |||||||| ||   ||||| ||||| |||||||| ||| |||||| ||||| |||||||    
T  14597976 gtttggccagtgcgcatgcctctacgcacgaactggattagtcgtccacctttgatggatcgaaaaccggtgcaaaagc 14597898  T

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Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 20421785 - 20421839
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgag 75  Q
    |||||||||||| |||||||||   ||||||||||||| ||| ||||||||||||    
T  20421785 gttcgatttccagggggaacaacacttggccagtgcgcatgcctctacgcatgag 20421839  T

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Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 21192667 - 21192745
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||| ||| ||||||||||| ||| |||||||| ||||||||||  |||  ||| ||||||| ||||||| |||||    
T  21192667 ggaacaacgttgggccagtgcgcatgcctctacgcacgagtcggattaatcgcccacatttggtgagtcgaaaaccggt 21192745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 24166462 - 24166512
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgca 71  Q
    |||||||| ||||||| ||||| ||||||||||||||| ||| ||||||||    
T  24166462 gttcgattcccaagggaaacaacgtttggccagtgcgcatgcctctacgca 24166512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 27531722 - 27531676
Alignment:
Q  68 cgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||||| | ||||| |||||||||||||||| ||||||||    
T  27531722 cgcatgagtcggaatagtcgtccacctttggtgggtcggaagccggt 27531676  T

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Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 55921046 - 55921139
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| |||||||||   |||| |||||||| ||| |||||| ||||| ||||||  |||  |||||||||||||||| || |||||    
T  55921046 gttcgattcccagggggaacaacacttggtcagtgcgcatgcctctacgtatgagccggattaatcgctcacctttggtgggtcggaaaccggt 55921139  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 38075445 - 38075529
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||  || ||| ||||| | ||||||||||||| ||| |||||||||||| || |||  | || ||||||||||||||||    
T  38075445 gttcgattctcaggggaaacaacgcttggccagtgcgcatgcctctacgcatgagccgaattaattgtccacctttggtgggtcg 38075529  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 42722471 - 42722391
Alignment:
Q  28 ttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    |||| ||||||||||   ||| ||||||||| | | |||| |||||||||||||| ||||| ||||  |||||||||||||    
T  42722471 ttcccaggggaacaacacttgaccagtgcgcatacctctatgcatgagtcggattagtcgtccaccaatggtgggtcgaaa 42722391  T

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Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 46108715 - 46108787
Alignment:
Q  33 aggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||||  |||||| ||||||| ||| |||||||||||| | |||| ||||| ||| |||| |||||||    
T  46108715 aggggaacaacatttggctagtgcgcatgcctctacgcatgagccagattagtcgtccacttttgatgggtcg 46108787  T

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Target: scaffold0016 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 8800 - 8716
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| ||| ||||||||| | ||||||||||||||||| ||||||||||||  ||||| ||||| ||||||||||||||||    
T  8800 gttcgattcccagggggaacaacgcttggccagtgcgcttgcctctacgcatgagctggattagtcgtccacctttggtgggtcg 8716  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 23511560 - 23511667
Alignment:
Q  7 tcgaagaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcga 106  Q
    |||| |||||||  ||||||||  |||||||| ||| ||||| ||||||||| ||| |||||||||||||||||||  |||| |||||||| ||||||||    
T  23511560 tcgaggaatatcgggttcgattcacaaggggagcaacgtttgaccagtgcgcatgcctctacgcatgagtcggattaatcgtccacctttgatgggtcga 23511659  T
Q  107 aagccggt 114  Q
    || |||||    
T  23511660 aaaccggt 23511667  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 47471845 - 47471922
Alignment:
Q  28 ttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||| |||||||||||| ||||| ||||||| |||||||||||||||| || ||| ||||| ||||||||||||||||    
T  47471845 ttcccaggggaacaatgcttggctagtgcgcatgcttctacgcatgagccgaattagtcgtccacctttggtgggtcg 47471922  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 47219142 - 47219244
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    ||||| || |||||||| ||||||| ||||| | ||||| ||||||| ||| |||||||||||| |||||| ||||| |||||||| ||||||| || ||    
T  47219142 gaataccaggttcgattcccaagggaaacaacgcttggctagtgcgcatgcctctacgcatgagccggattagtcgtccacctttgatgggtcggaaacc 47219241  T
Q  112 ggt 114  Q
    |||    
T  47219242 ggt 47219244  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 26362081 - 26361974
Alignment:
Q  7 tcgaagaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcga 106  Q
    |||| |||||||| ||| |||| ||||||||||||| |||||| ||||| || ||| |||||||| ||| |||||| ||||  |||||||| |||||||     
T  26362081 tcgaggaatatcaggtttgattcccaaggggaacaacgtttggtcagtgtgcatgcctctacgcacgagccggattagtcgcacacctttgatgggtcgg 26361982  T
Q  107 aagccggt 114  Q
    || |||||    
T  26361981 aaaccggt 26361974  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 54261248 - 54261326
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||| | ||||||||||||| ||| |||||||||||| |||||| ||||| ||||||| |||||||| || |||||    
T  54261248 ggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcggaaaccggt 54261326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 3136782 - 3136701
Alignment:
Q  33 aggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||   |||| |||||||| ||| ||||||||||||||||||| ||||| |||||||||| ||||| || |||||    
T  3136782 aggggaacaacacttgggcagtgcgcatgcctctacgcatgagtcggattagtcgtccacctttggttggtcggaaaccggt 3136701  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 7328851 - 7328943
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| |||||||||   ||||||||||||| ||| | |||||||||| |||||| ||||  ||||||||||||||||||| |||||    
T  7328851 gttcgattcccagggggaacaacacttggccagtgcgcatgcct-tacgcatgagccggattagtcgcccacctttggtgggtcgaaaaccggt 7328943  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 29127917 - 29128010
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||  |||||||||||| || ||||||   |||| |||||||| ||| |||||||||||| |||||| ||||  ||||||||||||||||    
T  29127917 gaatatcgggttcgatttccagggagaacaacacttggtcagtgcgcatgcctctacgcatgagccggattagtcgcccacctttggtgggtcg 29128010  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 30767356 - 30767263
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||  |||||||||||| |||||||||   |||||||||| || ||| |||||||| ||| |||||| ||||  ||||||||||||||||    
T  30767356 gaatatcgggttcgatttccagggggaacaacacttggccagtgtgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtcg 30767263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 33251683 - 33251756
Alignment:
Q  35 gggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    |||||||| |||||||||||| || ||| |||||||||||| |||||| ||||| ||| |||| ||||||||||    
T  33251683 gggaacaacgtttggccagtgtgcatgcctctacgcatgagccggattagtcgtccacatttgatgggtcgaaa 33251756  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 8164560 - 8164640
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    |||| ||||| ||||||||||| | ||||||||||||| ||| | |||||| |||||||||| ||||  ||||||||||||    
T  8164560 gttcaatttctaaggggaacaacgcttggccagtgcgcatgcctttacgcacgagtcggattagtcgcccacctttggtgg 8164640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 29135921 - 29136021
Alignment:
Q  22 ttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaag 121  Q
    ||||||| ||| |||||||||   ||||||||||||| ||| |||||||||||| |||||| ||| | |||| ||||||||| | || ||||||| ||||    
T  29135921 ttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcttccaccattggtgggttggaaaccggtacgaaag 29136020  T
Q  122 c 122  Q
    |    
T  29136021 c 29136021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 15320193 - 15320276
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    |||||||||| | | ||||||||| |||||||||| || ||| |||||||| ||| |||||| ||||  |||||||||||||||    
T  15320193 gttcgatttcgaggaggaacaatgattggccagtgtgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtc 15320276  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 52168678 - 52168583
Alignment:
Q  13 aatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    ||||||| |||||||||||| || |||||||||||||||| ||||| |||  | || |||||| |||||| ||||| |||  ||| ||||||||||    
T  52168678 aatatcaggttcgatttccagggtgaacaatgtttggccaatgcgcatgccccaacacatgagccggattagtcgttcacaattgatgggtcgaaa 52168583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 55069765 - 55069678
Alignment:
Q  35 gggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    |||||||| ||||||||||||| | ||| |||||||| ||| ||||||  |||  |||||||||||||||| || ||||| |||||||    
T  55069765 gggaacaacgtttggccagtgcacatgcctctacgcacgagccggattaatcgctcacctttggtgggtcggaaaccggtgcaaaagc 55069678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 10040575 - 10040645
Alignment:
Q  33 aggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggt 103  Q
    |||||||||| | ||||||||||||| ||| |||||||| ||| |||| | ||||| ||||||||||||||    
T  10040575 aggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggaatggtcgtccacctttggtgggt 10040645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 35315953 - 35316047
Alignment:
Q  11 agaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||  |||||||| ||| |||||||||   ||||||||||||| ||| ||||||||||||  ||||| ||||  ||| ||||||||||||    
T  35315953 agaatatcgggttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagctggattagtcgcccacttttggtgggtcg 35316047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 35923710 - 35923625
Alignment:
Q  34 ggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaa 119  Q
    ||||||||| ||||||||||||||| ||| |||| ||| |||||| ||| ||||| || ||||| ||| |||||| ||||| ||||    
T  35923710 ggggaacaacgtttggccagtgcgcatgcctctaagcacgagtcgaattagtcgtccatctttgatggatcgaaaaccggtgcaaa 35923625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 45877461 - 45877554
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||||||| ||| |||||   ||||||||||| | ||| |||||||||||| |||||| ||||| |||| ||| ||||||| || |||||    
T  45877461 gttcgatttccaggggaaacaacacttggccagtgcacatgcctctacgcatgagccggattagtcgttcaccattgatgggtcggaaaccggt 45877554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 3507608 - 3507540
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||||| ||| |||||||| ||| |||||| ||||  |||||||||||||||| || |||||    
T  3507608 ttggccagtgcgcatgcctctacgcacgagccggattagtcgctcacctttggtgggtcggaaaccggt 3507540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 30045828 - 30045912
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| | | ||||||||| | ||||||||||||| ||  |||||||| ||||| |||| ||||| |||||||| |||||||    
T  30045828 gttcgattcctagggggaacaacgcttggccagtgcgcatgtctctacgcacgagtctgattagtcgtccacctttgatgggtcg 30045912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 40660412 - 40660328
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    |||||||  ||||| |||||||| ||| |||||||||||  ||||||  || | ||||||||||||||||||| ||||| |||||    
T  40660412 ggaacaacatttggtcagtgcgcatgcctctacgcatgaaccggattaatcattcacctttggtgggtcgaaaaccggtgcaaaa 40660328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 41630612 - 41630528
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||| ||| ||||||||||||| | ||| ||||||||| ||| ||||| |||||| |||||| ||||  |||||||||| |||||    
T  41630612 gttcaattcccaaggggaacaacgcttgcccagtgcgcatgcctctacacatgagccggattagtcgcccacctttggttggtcg 41630528  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 43330803 - 43330731
Alignment:
Q  50 ccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||||||| ||| |||||||| ||| |||||| ||||  ||||||||||||||| ||| ||||||| |||||    
T  43330803 ccagtgcgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtcaaaaaccggtacgaaagc 43330731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 49021274 - 49021210
Alignment:
Q  50 ccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||| ||| |||||||||||| |||||| ||||| |||| ||||||||||| || |||||    
T  49021274 ccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcggaaaccggt 49021210  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 49198358 - 49198438
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    |||||||| | | |||||||||   ||||||||||||| ||| |||||||||||| |||||| ||||| |||| |||||||    
T  49198358 gttcgattcctagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgg 49198438  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 26043819 - 26043898
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtg 100  Q
    |||||||| ||| || ||||||   ||||||||||||| ||| |||||||||||| |||||| ||||  |||||||||||    
T  26043819 gttcgattcccagggagaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgctcacctttggtg 26043898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 50405703 - 50405604
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    |||||||| | | ||| ||||| | ||| ||||||||| ||| |||||||| |||||||||| ||||  |||| ||||||||||| || ||||| |||||    
T  50405703 gttcgattccgaggggaaacaacgcttgaccagtgcgcatgcctctacgcacgagtcggattagtcgcccaccattggtgggtcggaaaccggtgcaaaa 50405604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 3755578 - 3755655
Alignment:
Q  22 ttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggt 99  Q
    ||||||| ||| | ||||||| ||||| ||||||||| ||  |||||||||||| |||||| |||||  |||||||||    
T  3755578 ttcgattcccaggaggaacaacgtttgaccagtgcgcatgtctctacgcatgagccggattagtcgtctacctttggt 3755655  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 13893937 - 13894026
Alignment:
Q  25 gatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||||||||| | |||| || ||||| ||| ||||| || ||| |||||| ||||  |||||||||||| |||||| |||||    
T  13893937 gatttccagggggaacaacgcttggtcaatgcgcatgcctctacacacgagccggattagtcgcccacctttggtggatcgaaaaccggt 13894026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 22909821 - 22909874
Alignment:
Q  52 agtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||| | |||||||||||||| || ||| |||||||||||||| |||||||    
T  22909821 agtgcgcatacttctacgcatgagccgaattagtcgtgcacctttgatgggtcg 22909874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 24506736 - 24506647
Alignment:
Q  33 aggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    |||| ||||| | ||| ||||||| | ||| |||||||||||||| |||| ||||  |||| ||||||||||| || ||||| |||||||    
T  24506736 agggaaacaacgcttgaccagtgcacatgcctctacgcatgagtcagattagtcgctcaccattggtgggtcggaaaccggtgcaaaagc 24506647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 25294992 - 25295049
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggt 103  Q
    ||||||||||||| ||| |||| ||||||| |||||| ||||| |||| |||||||||    
T  25294992 ttggccagtgcgcatgcctctatgcatgagccggattagtcgtccaccattggtgggt 25295049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 28572311 - 28572218
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| ||| ||||| | |||||||||  || ||| |||||||| ||| |||||| ||||  |||||||||||||||| || |||||    
T  28572311 gttcgattcccaggggaaacaacgcttggccagtatgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtcggaaaccggt 28572218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 37092601 - 37092568
Alignment:
Q  25 gatttccaaggggaacaatgtttggccagtgcgc 58  Q
    |||||||||||||||||| |||||||||||||||    
T  37092601 gatttccaaggggaacaacgtttggccagtgcgc 37092568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 45402424 - 45402367
Alignment:
Q  48 ggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||| |||||| ||| |||||||||||| |||||| ||||| ||||||| ||||||||    
T  45402424 ggcctgtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcg 45402367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 11687196 - 11687148
Alignment:
Q  34 ggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggatt 82  Q
    ||||||||||| ||||||||||||| ||| |||||| ||||||| ||||    
T  11687196 ggggaacaatgcttggccagtgcgcatgcctctacgtatgagtcagatt 11687148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 29762230 - 29762162
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||||| ||| |||| |||||||  ||||| ||||| |||| ||||||||||| || |||||    
T  29762230 ttggccagtgcgcatgcctctatgcatgagctggattagtcgtccaccattggtgggtcggaaaccggt 29762162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 44064584 - 44064652
Alignment:
Q  54 tgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||| ||| |||||||||||  |||||| ||||  |||||||||||||||| || ||||| |||||||    
T  44064584 tgcgcatgcctctacgcatgaaccggattagtcgctcacctttggtgggtcggaaaccggtgcaaaagc 44064652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 53649759 - 53649827
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||||| ||  |||||||||||| |||||| ||||| |||||||| ||| ||| || |||||    
T  53649759 ttggccagtgcgcctgtctctacgcatgagccggattagtcgttcacctttgatggatcggaaaccggt 53649827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 9856 - 9938
Alignment:
Q  22 ttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    ||||||||||| ||||||||| | ||||||||||||| ||| |||||||| ||| |||||| ||||| |||||||||||||||    
T  9856 ttcgatttccagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgtccacctttggtgggtc 9938  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 11397982 - 11397905
Alignment:
Q  28 ttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||| |||||||||| ||||||||| ||||  ||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  11397982 ttccgaggggaacaacgtttggccaatgcgtatgcctctacgcatgagtcggattagtcgtccacctttggtgggtcg 11397905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 50094925 - 50095013
Alignment:
Q  34 ggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||||||| ||||| ||||| ||| ||||||||||||||||||||||| ||||| |||| || |||||||| || ||||| |||||||    
T  50094925 ggggaacaacgtttgaccagtacgcatgcttctacgcatgagtcggattagtcgtccaccattagtgggtcggaaaccggtgcaaaagc 50095013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 32151036 - 32150935
Alignment:
Q  7 tcgaagaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcga 106  Q
    |||| |||||||| |||||||||||| |||||||||  ||||| |||||||| ||| | |||||||||| || ||| ||||  |||||||| ||||||||    
T  32151036 tcgaggaatatcaggttcgatttccagggggaacaacatttggtcagtgcgcatgcctttacgcatgagccgaattagtcgctcacctttgatgggtcga 32150937  T
Q  107 aa 108  Q
    ||    
T  32150936 aa 32150935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 5855530 - 5855614
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| ||| | ||||||| | ||||||||||||| ||| |||||||||||| |||||| ||||| ||||||| ||||||||    
T  5855530 gttcgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgcatgaggcggattagtcgttcacctttagtgggtcg 5855614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 17642104 - 17642020
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| ||| |||||||||   ||||||||||||| ||| |||||||| ||| |||||| ||||| ||||||||||||||||    
T  17642104 gttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcacgagccggattagtcgtccacctttggtgggtcg 17642020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 15465964 - 15466074
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    ||||| || |||||||||||| ||||||||| | |||| |||||| | ||| |||||||| ||||| |||| ||||  |||||||||||||||| || ||    
T  15465964 gaataccaggttcgatttccagggggaacaacgcttggtcagtgcacatgcctctacgcacgagtctgattggtcgctcacctttggtgggtcggaaacc 15466063  T
Q  112 ggtacaaaagc 122  Q
    | ||| |||||    
T  15466064 gatacgaaagc 15466074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 10336514 - 10336611
Alignment:
Q  11 agaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    ||||||||  ||||||||| || ||||||||| | ||| ||||||||| ||| |||||||||||| ||||||  |||| |||||||| ||| ||||||    
T  10336514 agaatatcgggttcgattttcagggggaacaacgcttgaccagtgcgcatgcctctacgcatgagccggattaatcgtccacctttgatggatcgaaa 10336611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 30927827 - 30927726
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    ||||||||||||  |||||||| | ||||||| || || ||| |||||||||||| |||||| ||||| ||| |||||||||||  || ||||| |||||    
T  30927827 gttcgatttccagagggaacaacgcttggccaatgtgcatgcctctacgcatgagccggattagtcgtccacttttggtgggtcagaaaccggtgcaaaa 30927728  T
Q  121 gc 122  Q
    ||    
T  30927727 gc 30927726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 33004114 - 33004022
Alignment:
Q  22 ttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||| ||| ||||||| ||||||||||||| ||| |||||||| ||| |||||| |||   ||||  ||||||||||||| |||||    
T  33004114 ttcgatttccaggggaaacaatgcttggccagtgcgcatgcctctacgcacgagccggattagtcacccaccaatggtgggtcgaaaaccggt 33004022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 9659272 - 9659197
Alignment:
Q  28 ttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggt 103  Q
    |||| |||||||||| ||||| | ||||||| ||| | |||||||||| |||||| ||||| ||||||||||||||    
T  9659272 ttcccaggggaacaacgtttgactagtgcgcatgcctttacgcatgagccggattagtcgtccacctttggtgggt 9659197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 8763990 - 8764092
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    |||||||  ||||| || ||| |||||||||   ||||||||||||| ||| |||||||| ||| |||||| ||||| |||| ||||||||||| || ||    
T  8763990 gaatatcgggttcgtttcccagggggaacaacacttggccagtgcgcatgcctctacgcacgagccggattagtcgtccaccgttggtgggtcggaaacc 8764089  T
Q  112 ggt 114  Q
    |||    
T  8764090 ggt 8764092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 10422796 - 10422874
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggt 99  Q
    |||||||||| | | |||||||   ||||||||||||| ||| |||||||||||| |||||| ||||| ||||||||||    
T  10422796 gttcgatttctaggaggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggt 10422874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 26325811 - 26325913
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    |||||||  |||||||| |||  ||||||||   |||| |||||||| ||| |||||||||||| |||||| ||||| |||| ||||||||||| || ||    
T  26325811 gaatatcgggttcgattcccagcgggaacaacacttggtcagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcggaaacc 26325910  T
Q  112 ggt 114  Q
    |||    
T  26325911 ggt 26325913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 21849298 - 21849205
Alignment:
Q  28 ttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaag 121  Q
    |||| |||||||||| | ||||| ||||||| ||| |||||||| ||| |||||| ||||  |||  |||||||||||||| ||||||| ||||    
T  21849298 ttcccaggggaacaacgcttggctagtgcgcatgcctctacgcacgagccggattagtcgctcactattggtgggtcgaaaaccggtacgaaag 21849205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 26660146 - 26660238
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||||||| |||||||||  ||||  |||| ||| ||| |||||||||||| |||||| ||||  |||||||||||||||| || |||||    
T  26660146 gttcgatttccacggggaacaacatttgatcagtacgcatgcctctacgcatgagccggattagtcg-ccacctttggtgggtcggaaaccggt 26660238  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 41663956 - 41663863
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| |||||||||   |||| |||||||| ||| ||||||||||||  ||||| ||||| |||| ||||||||||| || |||||    
T  41663956 gttcgattcccagggggaacaacacttggtcagtgcgcatgcctctacgcatgagctggattagtcgtccaccattggtgggtcggaaaccggt 41663863  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 49078122 - 49078215
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| ||| |||||   ||||||||||||| ||| |||||||||||| |||||| ||||| |||| ||||| ||||| || |||||    
T  49078122 gttcgattcccaggggaaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgttcaccattggtaggtcggaaaccggt 49078215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 4581757 - 4581689
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||||| ||| |||||||| ||| |||| | ||||| |||||||||||||||| || |||||    
T  4581757 ttggccagtgcgcatgcctctacgcacgagccggaatagtcgtccacctttggtgggtcggaaaccggt 4581689  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 33498914 - 33498838
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||||||||||| ||| |||||||||||| |||||| ||||| |||||||| ||| ||| ||  |||||| |||||    
T  33498914 ttggccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttgatggatcgtaaagcggtacgaaagc 33498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 12036831 - 12036764
Alignment:
Q  34 ggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    ||||||||||| ||||||||||||| ||| |||||||| ||| | ||||  |||| ||||||||||||    
T  12036831 ggggaacaatgcttggccagtgcgcatgcctctacgcacgagccagattaatcgtccacctttggtgg 12036764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 38859216 - 38859117
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    |||||||| ||| ||| |||||||||||| || ||| | ||| |||||||| ||||| ||||  |||  |||||||| |||||||||| ||||| |||||    
T  38859216 gttcgattcccaggggtaacaatgtttggtcaatgcacatgcctctacgcacgagtcagattaatcgcccacctttgatgggtcgaaaaccggtgcaaaa 38859117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 16263544 - 16263646
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    ||||| || |||||||||||| | ||||||| | ||||||||||||| ||| ||||||||| || |||| | ||||| ||| |||| ||| ||| || ||    
T  16263544 gaataccaggttcgatttccaggaggaacaacgcttggccagtgcgcatgcctctacgcataagccggaatagtcgtccacttttgatggatcggaaacc 16263643  T
Q  112 ggt 114  Q
    |||    
T  16263644 ggt 16263646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 43959930 - 43959828
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    |||||||  |||| ||| ||| ||||||||| | ||||||||||||| ||| |||||||| ||| |||||| ||||  ||||||| |||| ||| || ||    
T  43959930 gaatatcgggttcaattcccagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgcccacctttagtggatcggaaacc 43959831  T
Q  112 ggt 114  Q
    |||    
T  43959830 ggt 43959828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 45361967 - 45361889
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||| | ||||||||||||| |||  |||||||| || |||||| ||||| ||||||| |||||||| || |||||    
T  45361967 ggaacaacgcttggccagtgcgcatgccactacgcataagccggattagtcgttcacctttagtgggtcggaaaccggt 45361889  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 48798179 - 48798109
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggatt 82  Q
    |||||||  |||||||||||| ||||||||| | ||| | ||||||| ||| |||||||||||| ||||||    
T  48798179 gaatatcgggttcgatttccagggggaacaacgcttgactagtgcgcatgcctctacgcatgagccggatt 48798109  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 5504082 - 5504139
Alignment:
Q  64 tctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaag 121  Q
    |||||||||||| |||||| ||||| |||||||| ||||||| || ||||||| ||||    
T  5504082 tctacgcatgagccggattagtcgtccacctttgatgggtcggaaaccggtacgaaag 5504139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 10173055 - 10172978
Alignment:
Q  37 gaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||| | ||||||||||| | ||| |||||||||||| ||||||  |||  |||||||||||||||| || |||||    
T  10173055 gaacaacgcttggccagtgcccatgcctctacgcatgagccggattactcgcccacctttggtgggtcggaaaccggt 10172978  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 10507721 - 10507790
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||| |||||||||||| || | | |||||||||||| |||||| ||||| ||||  ||||||||||    
T  10507721 ggaacaacgtttggccagtgtgcatacctctacgcatgagccggattagtcgtccaccactggtgggtcg 10507790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 35211272 - 35211179
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||||   ||||||||| || |||| | ||| ||| ||||||||||||  | ||| ||||| |||||||||||||||| || |||||    
T  35211272 gttcgatttccagaaggaacaatgcttagccaatacgcatgcctctacgcatgagctgaattagtcgtccacctttggtgggtcggaaaccggt 35211179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 32142946 - 32142862
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||| || |||||||||   ||||||||||||| ||| | |||||||||| || ||| ||||  |||||||| |||||||    
T  32142946 gttcgattttcagggggaacaacacttggccagtgcgcatgcctttacgcatgagccgaattagtcgctcacctttgatgggtcg 32142862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 34719784 - 34719868
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| |||  ||||| || | ||| ||||||||| ||| |||||||| ||||| |||| ||||  ||||||||||||||||    
T  34719784 gttcgattcccactgggaataacgcttgaccagtgcgcatgcctctacgcacgagtcagattagtcgctcacctttggtgggtcg 34719868  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 45726509 - 45726453
Alignment:
Q  45 tttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    |||||||||||||  ||  |||||||||||| |||||| ||||| ||||||||||||    
T  45726509 tttggccagtgcgtatgtctctacgcatgagccggattagtcgttcacctttggtgg 45726453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 47312992 - 47312932
Alignment:
Q  28 ttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgt 88  Q
    |||| |||||||||| ||||||||||||||  ||| |||||||||||| | |||| |||||    
T  47312992 ttcctaggggaacaacgtttggccagtgcgtatgcctctacgcatgagccagattagtcgt 47312932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 8888884 - 8888980
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    ||||||| | ||||||||  ||||| ||||| ||||||||||||||| | | ||||||||||||||||||| ||||| |||||||| ||| ||||||    
T  8888884 gaatatcgaattcgatttttaagggaaacaacgtttggccagtgcgcatacctctacgcatgagtcggattagtcgtccacctttgatggatcgaaa 8888980  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 12606442 - 12606520
Alignment:
Q  22 ttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtg 100  Q
    ||||||||||| ||||||||| ||||||||||||||| ||| |||||||| ||| |||||| ||||  |||||||||||    
T  12606442 ttcgatttccagggggaacaacgtttggccagtgcgcatgcctctacgcacgagccggattagtcgcccacctttggtg 12606520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 21898659 - 21898752
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| | ||||||| | ||||||||||||| ||| |||||||||||| |||||| ||||| ||||||| |||||||| || |||||    
T  21898659 gttcgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcggaaaccggt 21898752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 29333237 - 29333154
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||||||| ||||||||| ||||||||||||||| ||| |||||||||||| || ||  ||||| |||||||||| |||||    
T  29333237 gttcgatttcca-ggggaacaacgtttggccagtgcgcatgcctctacgcatgagccgaatcagtcgtccacctttggtaggtcg 29333154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 29444864 - 29444780
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||||| | ||||||||| | ||||||||||||| ||| |||||||||||| |||||| || || || |||||||||||||    
T  29444864 gttcgatttctagggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagttgtccatctttggtgggtcg 29444780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 5253322 - 5253229
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| |||||||||   ||||||||||||| ||| |||||||||||| ||||||  |||  |||||||||||||||| || |||||    
T  5253322 gttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattaatcgcccacctttggtgggtcggaaaccggt 5253229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 13391309 - 13391397
Alignment:
Q  33 aggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaag 121  Q
    |||||||||||||||||||||||||| ||| |||||||| ||| |||||| ||||  ||  |||  |||||||||| ||||| ||||||    
T  13391309 aggggaacaatgtttggccagtgcgcatgcctctacgcacgagccggattagtcgcccatatttaatgggtcgaaaaccggtgcaaaag 13391397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 13036112 - 13036010
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    |||||||  ||||||||| || |||||||||   ||||||||||||| ||| |||||||||||| | |||| ||||| |||  ||||||||||| || ||    
T  13036112 gaatatcgggttcgattttcagggggaacaacacttggccagtgcgcatgcctctacgcatgagccagattagtcgtccactattggtgggtcggaaacc 13036013  T
Q  112 ggt 114  Q
    |||    
T  13036012 ggt 13036010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 30788937 - 30788859
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||| ||||||||||||||| ||| |||| ||| ||| |||||| ||||  |||||||||||||||| || |||||    
T  30788937 ggaacaacgtttggccagtgcgcatgcctctaggcacgagccggattagtcgcccacctttggtgggtcggaaaccggt 30788859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 9633708 - 9633631
Alignment:
Q  37 gaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||| | ||||||||||||| ||| |||||||| ||| |||||| ||||  |||||||||||||||| || |||||    
T  9633708 gaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtcggaaaccggt 9633631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 34954727 - 34954634
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||| || ||||||||  || ||||||||| ||||||||||||| | | | |||||||||||| | |||| ||||| |||||||| |||||||    
T  34954727 gaataccaggttcgattctcagggggaacaacgtttggccagtgcacatacctctacgcatgagccagattagtcgtccacctttgatgggtcg 34954634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 3601108 - 3601188
Alignment:
Q  34 ggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||| | ||||||||||||| ||| | ||| || ||| |||||| ||||| |||||||||||||||| || |||||    
T  3601108 ggggaacaacgcttggccagtgcgcatgcctatacacacgagccggattagtcgtccacctttggtgggtcggaaaccggt 3601188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 11142631 - 11142698
Alignment:
Q  38 aacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||| ||||| ||||||||| ||| |||||||||||||| |||| || || || |||||||||||||    
T  11142631 aacaacgtttgaccagtgcgcatgcctctacgcatgagtcagattagttgtccaactttggtgggtcg 11142698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 15643890 - 15643839
Alignment:
Q  64 tctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggta 115  Q
    ||||||||||||||||||| ||||  ||||||| ||||||||||| ||||||    
T  15643890 tctacgcatgagtcggattagtcgcccacctttagtgggtcgaaaaccggta 15643839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 19089500 - 19089602
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    ||||| || ||| |||| ||| |||||||||   |||||||||| || ||| |||||||| ||| |||||| |||||  ||||||||||||||| || ||    
T  19089500 gaataccaggtttgattcccagggggaacaacacttggccagtgagcatgcctctacgcacgagccggattagtcgtctacctttggtgggtcggaaacc 19089599  T
Q  112 ggt 114  Q
    |||    
T  19089600 ggt 19089602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 6606196 - 6606103
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||  || |||||||||   ||||||||||  | ||| |||||||||||| |||||| ||||| |||| ||||||||||| || |||||    
T  6606196 gttcgattctcagggggaacaacacttggccagtgtacatgcctctacgcatgagccggattagtcgtccaccattggtgggtcggaaaccggt 6606103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 10311558 - 10311481
Alignment:
Q  31 caaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    |||||||||||| | ||||||||||||| ||  |||||||| ||||  |||| ||||  |||| ||||||||||||||    
T  10311558 caaggggaacaacgcttggccagtgcgcatgtctctacgcacgagttagattagtcgctcaccattggtgggtcgaaa 10311481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 3588044 - 3587968
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttg 97  Q
    |||||||| ||||||||||||| | ||||||||||| | | | |||||||||||  |||||| |||||  |||||||    
T  3588044 gttcgattcccaaggggaacaacgcttggccagtgcacatacctctacgcatgaaccggattagtcgtcaacctttg 3587968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 5029844 - 5029912
Alignment:
Q  37 gaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||| |||||| |||||||| ||| ||||||||||||| ||||| ||||  || ||||| |||||||    
T  5029844 gaacaacgtttggtcagtgcgcatgcctctacgcatgagttggattagtcgcccatctttgatgggtcg 5029912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 8612058 - 8611990
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    ||||||| | ||| |||||| || |||||||||||||||  |||||| ||||  |||||||||||||||    
T  8612058 ggaacaacgcttgaccagtgtgcatgcttctacgcatgaaccggattagtcgcccacctttggtgggtc 8611990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 14783494 - 14783426
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||| |||| || ||| |||||||||||| |||||| ||||| |||| ||||||||||| || |||||    
T  14783494 ttggctagtgtgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcggaaaccggt 14783426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 31129213 - 31129281
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||| ||||||| ||| |||||||||||| | |||| || |||||||||||||| |||| || |||||    
T  31129213 ttggctagtgcgcatgcctctacgcatgagccagattagttgtgcacctttggtgagtcggaaaccggt 31129281  T

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Target: scaffold0316 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 1722 - 1620
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    ||||| || |||||||||||| ||||||||| | || |||||||||| ||| |||||||||||| |  ||| ||||  ||||||||||||||||||| ||    
T  1722 gaataccaggttcgatttccagggggaacaacgattagccagtgcgcatgcctctacgcatgagccaaattagtcgcccacctttggtgggtcgaaaacc 1623  T
Q  112 ggt 114  Q
    |||    
T  1622 ggt 1620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 4479388 - 4479302
Alignment:
Q  28 ttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||| |||||||||| | ||||||||||||| ||| ||||||||||||  ||||| ||||| |||||||||||||||| || |||||    
T  4479388 ttcccaggggaacaacgcttggccagtgcgcatgcctctacgcatgagctggattagtcgtccacctttggtgggtcggaaaccggt 4479302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 14846598 - 14846670
Alignment:
Q  33 aggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||||||| |||| |||||||| ||| |||||||||||||| |||  ||||| ||||||||||||||||    
T  14846598 aggggaacaatgattggtcagtgcgcatgcctctacgcatgagtcagataagtcgtccacctttggtgggtcg 14846670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 18374037 - 18374121
Alignment:
Q  37 gaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaag 121  Q
    |||||| | ||| ||||||||| ||| |||||||||||| |||||| ||||| || |||||||||||||||| ||||| ||||||    
T  18374037 gaacaacgcttgaccagtgcgcatgcctctacgcatgagccggattagtcgtccaactttggtgggtcgaaaaccggtgcaaaag 18374121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 6100483 - 6100570
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    |||||||| ||| | ||||||| | ||||||||||||| |||  ||||||||||| |||||| ||||| ||||||| |||||||||||    
T  6100483 gttcgattcccaggaggaacaacgcttggccagtgcgcatgccactacgcatgagccggattagtcgttcacctttagtgggtcgaaa 6100570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 10927632 - 10927701
Alignment:
Q  36 ggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||| | ||||||||||||| ||| |||||||||||| |||||| ||||| ||||||| ||||||||    
T  10927632 ggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcg 10927701  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 8141113 - 8141196
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    |||||||||||| ||| ||||| | ||||||||||||| ||| ||||||||||||  | ||| ||||| ||| |||||||||||    
T  8141113 gttcgatttccaggggaaacaacgcttggccagtgcgcatgcctctacgcatgagctgaattagtcgtccacatttggtgggtc 8141196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 3418587 - 3418529
Alignment:
Q  46 ttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    ||||||||||||| ||| |||||||||||||| |||| ||||| ||||||| |||||||    
T  3418587 ttggccagtgcgcatgcgtctacgcatgagtcagattagtcgtccacctttagtgggtc 3418529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 43032913 - 43032995
Alignment:
Q  22 ttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    ||||||| ||| ||||||||| | ||||||||||||| ||| ||||| || ||| |||||| ||||  |||||||||||||||    
T  43032913 ttcgattcccagggggaacaacgcttggccagtgcgcatgcctctacacacgagccggattagtcgcccacctttggtgggtc 43032995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 8997643 - 8997550
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| | ||||||||||| |||| |||||| ||| ||| | |||||||||| | |||| ||||| || ||||||||||||| || |||||    
T  8997643 gttcgattcctaaggggaacaacgtttcgccagttcgcatgcctatacgcatgagccagattagtcgttcatctttggtgggtcggaaaccggt 8997550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 6042832 - 6042915
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtc 104  Q
    |||||||| ||||||||||||| | ||||||||||||| ||| |  ||||||||| |||||| ||||  ||||  |||||||||    
T  6042832 gttcgattcccaaggggaacaacgcttggccagtgcgcatgcctaaacgcatgagccggattagtcgcccaccactggtgggtc 6042915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 583837 - 583899
Alignment:
Q  35 gggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttg 97  Q
    |||||||| | ||| ||||||||| ||| ||||||||||||||||||| ||||  ||||||||    
T  583837 gggaacaacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgcccacctttg 583899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 3692867 - 3692945
Alignment:
Q  44 gtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    |||||| |||||||| | | |||||||||||| || |||  |||| |||||||||| |||||||| ||||||| |||||    
T  3692867 gtttggtcagtgcgcatacctctacgcatgagccgaattaatcgttcacctttggtaggtcgaaaaccggtacgaaagc 3692945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 15884648 - 15884562
Alignment:
Q  28 ttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||| ||||||||||   ||||| ||||||| ||| |||||||| ||| |||||| ||||  |||||||||||||||| || |||||    
T  15884648 ttcccaggggaacaacacttggcaagtgcgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtcggaaaccggt 15884562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 2467217 - 2467124
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||||||| |||||||||   ||||||||||||| ||  |||| ||||||| |||||| ||||| |||  |||||| |||| || |||||    
T  2467217 gttcgatttccagggggaacaactcttggccagtgcgcatgtctctatgcatgagccggattagtcgtccacaattggtgtgtcggaaaccggt 2467124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 16291302 - 16291209
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||| || |||||||||   ||||||||| | | ||| |||| |||||||  ||||| ||||  ||||||||||||||||||| |||||    
T  16291302 gttcgattttcagggggaacaacacttggccagtacacatgcctctatgcatgagctggattagtcgctcacctttggtgggtcgaaaaccggt 16291209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 25848230 - 25848274
Alignment:
Q  64 tctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaa 108  Q
    ||||||||||||||||| | ||||| |||||||| ||||||||||    
T  25848230 tctacgcatgagtcggactagtcgtccacctttgctgggtcgaaa 25848274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 33401898 - 33401818
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgg 101  Q
    ||||||||| || |||||||||   ||| |||||| || ||| ||||||||||||||||||| ||||  ||||||| ||||    
T  33401898 gttcgattttcagggggaacaacacttgaccagtgtgcatgcctctacgcatgagtcggattagtcgcccacctttagtgg 33401818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 43027316 - 43027400
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||| ||| | ||||||| | ||| ||| ||||| ||| |||||||||||| |||||| ||||| || ||||| |||||||    
T  43027316 gttcgattcccaggaggaacaacgattgtccaatgcgcatgcctctacgcatgagccggattagtcgtccatctttgatgggtcg 43027400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 44893377 - 44893277
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaa 120  Q
    |||| ||||| | ||||||||||| |||||||||| || ||| |||||||| ||| ||||||  |||  |||| ||| ||||||| || ||||| |||||    
T  44893377 gttcaatttctagggggaacaatgcttggccagtgtgcatgcctctacgcacgagccggattaatcgctcacccttgatgggtcggaaaccggtgcaaaa 44893278  T
Q  121 g 121  Q
    |    
T  44893277 g 44893277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 6865 - 6958
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| |||||||||   ||||||||||||| ||| |||||||||||| |||||| ||||  |||||||||||||||| || |||||    
T  6865 gttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgctcacctttggtgggtcggaaaccggt 6958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 155809 - 155717
Alignment:
Q  22 ttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||| ||| ||||||||| | ||||| ||||||| ||| |||||||| ||| |||||| ||||  |||||||||||||||| ||||||||    
T  155809 ttcgattcccagggggaacaacgcttggctagtgcgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtcggaagccggt 155717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 42940 - 42838
Alignment:
Q  12 gaatatcaagttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagcc 111  Q
    |||||||  |||||||| | | || |||||||| |||| |||||||| ||| ||||| |||||| |||||| ||||  |||||||||||||||| || ||    
T  42940 gaatatcgggttcgattcctagggagaacaatgcttggtcagtgcgcatgcctctacacatgagccggattagtcgcccacctttggtgggtcggaaacc 42841  T
Q  112 ggt 114  Q
    |||    
T  42840 ggt 42838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 5983 - 6066
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    |||||||||||| ||||| ||| | ||||||||||| | ||| |||||||||||| || ||| ||||| |||| |||||||||||    
T  5983 gttcgatttccaggggga-caacgcttggccagtgcacatgcctctacgcatgagacgaattagtcgtccaccattggtgggtcg 6066  T

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Target: scaffold0086 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 26193 - 26260
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgt 88  Q
    |||||||||||| ||||||||| | |||||||||| || ||| |||||||| ||| |||||| |||||    
T  26193 gttcgatttccagggggaacaacgcttggccagtgtgcatgcctctacgcacgagccggattagtcgt 26260  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 68527 - 68617
Alignment:
Q  21 gttcgatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    |||||||| ||| ||||||||| | ||||   |||||| ||| |||||||| ||| |||||| ||||  ||||||||||||||||||| |||||    
T  68527 gttcgattcccagggggaacaacgcttgg---gtgcgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtcgaaaaccggt 68617  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 250103 - 250040
Alignment:
Q  42 atgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcg 105  Q
    ||||||||||||||||| ||| |||||||| ||| |||||| ||||  | ||||||||||||||    
T  250103 atgtttggccagtgcgcatgcctctacgcacgagccggattagtcgctcgcctttggtgggtcg 250040  T

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Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 219402 - 219480
Alignment:
Q  44 gtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    ||||||||||||||| ||| |||||||| ||   ||||| ||||| |||||||| ||| |||||| ||||| |||||||    
T  219402 gtttggccagtgcgcatgcctctacgcacgaactggattagtcgtccacctttgatggatcgaaaaccggtgcaaaagc 219480  T

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Target: scaffold0209 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 12597 - 12659
Alignment:
Q  35 gggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttg 97  Q
    |||||||| | ||| ||||||||| ||| ||||||||||||||||||| ||||  ||||||||    
T  12597 gggaacaacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgcccacctttg 12659  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 25107 - 25188
Alignment:
Q  33 aggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggt 114  Q
    ||||||||||  ||||| |||||||| || |||||||||||| || ||||  |||| |||||||||||| ||| || |||||    
T  25107 aggggaacaacatttggacagtgcgcatgtttctacgcatgaatcagattaatcgtccacctttggtggatcggaaaccggt 25188  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 7930 - 7833
Alignment:
Q  25 gatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtgggtcgaaagccggtacaaaagc 122  Q
    |||| |||||||||| ||   ||||||||||||| ||| ||||||||| ||  ||||| ||||  |||||||||||| ||| || ||||||| |||||    
T  7930 gattcccaaggggaaaaacacttggccagtgcgcatgcctctacgcattagctggattagtcgcccacctttggtggatcggaaaccggtacgaaagc 7833  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 319436 - 319513
Alignment:
Q  25 gatttccaaggggaacaatgtttggccagtgcgcttgcttctacgcatgagtcggattcgtcgtgcacctttggtggg 102  Q
    |||||| | ||||||||| | ||||||||||||| | | |||| |||||||  ||||| ||||| |||||||||||||    
T  319436 gatttctagggggaacaacgcttggccagtgcgcatccctctatgcatgagctggattagtcgtccacctttggtggg 319513  T

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