View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_26 (Length: 391)
Name: NF1720_high_26
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Original strand, 46012277 - 46012654
Alignment:
| Q |
14 |
gaaaacacatgcatcatccaaagaaagaaaaatgttgtttgatataaggaacttgaaaattcacaaggccacgatggcttttatgtaaaaccatatagaa |
113 |
Q |
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| T |
46012277 |
gaaaacacatgcatcatccaaagaaagaaaaatgttgtttgatataaggagcttgaaaattcacaaggccacgatggcttttatgtaaaaccatatagaa |
46012376 |
T |
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| Q |
114 |
gcataaaatttgcatcaaaccatgtcaagggtagtagtacctttgtacccacgaaaattgaaggagatggcagaccagataggaggaaacaagaggtatg |
213 |
Q |
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| T |
46012377 |
gcataaaatttgcatcaaaccatgtcaagggtagtagtacctttgtacccgcgaaaattgaaggagatggcagaccagataggaggaaacaagaggtatg |
46012476 |
T |
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| Q |
214 |
caatgaatagtgctccagctgttccagcaatcacggtaggatctgatgaagttatagtttccatggttgatgaggctattggcttggcaccttcaatcac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46012477 |
caatgaatagtgctccagctgttccagcaatcacggtaggatctgatgaagttatagtttccatggttgatgaggctattggcttggcaccttcaatcac |
46012576 |
T |
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| Q |
314 |
cttggttgtttgttgtgcagcatctgccactatctaaactcaaagatgatatccaaatccgattgataaattaacttg |
391 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||| || ||||||||||||||| |
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| T |
46012577 |
cttggttgtttgttgtgcagcatctgccactgtctaaaatcaaagatgatatccgaatcagaatgataaattaacttg |
46012654 |
T |
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