View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_27 (Length: 389)
Name: NF1720_high_27
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 371
Target Start/End: Complemental strand, 4143427 - 4143066
Alignment:
| Q |
15 |
tatacatatgactagaggaaaattaaatatatgtcatgttccatat-----ttgatctaatgattagtataatatttcaggaccaatgtactataaagga |
109 |
Q |
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| T |
4143427 |
tatacatatgactagaggaaaattaaatatatgtcatgttccatatgaaatttgatctaatgattagtataatatttcaggaccaatgtactataaagga |
4143328 |
T |
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| Q |
110 |
ttttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaatatccaaagatctcataaattgga |
209 |
Q |
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| T |
4143327 |
ttttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaatatccaaagatctcataaattgga |
4143228 |
T |
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| Q |
210 |
ctcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttgcttctcaggctcagccacaatagtccctggagaacaacctgttatatatat |
309 |
Q |
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| T |
4143227 |
ctcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttgcttctcaggctcagccacaatagtccctggagaacaacctgttatatatat |
4143128 |
T |
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| Q |
310 |
gttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctatgccgaagg |
371 |
Q |
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| T |
4143127 |
gttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctatgccgaagg |
4143066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 87 - 238
Target Start/End: Complemental strand, 4138604 - 4138453
Alignment:
| Q |
87 |
caggaccaatgtactataaaggattttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaat |
186 |
Q |
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| T |
4138604 |
caggaccaatgtactataaaggtgtttaccatttattctaccaatataaccctgatgcagcaacatttggtcatgagaaaatggtatggggtcattctat |
4138505 |
T |
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| Q |
187 |
atccaaagatctcataaattggactcatttgaatcatgctattgaaccaact |
238 |
Q |
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| T |
4138504 |
atcaaatgatctcataaattggactcatctaaatgatgctattgtaccaact |
4138453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 4129811 - 4129737
Alignment:
| Q |
164 |
aaaatggtatggggtcattcaatatccaaagatctcataaattggactcatttgaatcatgctattgaaccaact |
238 |
Q |
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| T |
4129811 |
aaaatggtatggggtcattctatatcaaatgatctcataaattggactcatctaaatgatgctattgtaccaact |
4129737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 4130450 - 4130402
Alignment:
| Q |
87 |
caggaccaatgtactataaaggattttaccatttcttctaccaacataa |
135 |
Q |
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| T |
4130450 |
caggaccaatgtactataaaggagtttaccatttattctaccaatataa |
4130402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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