View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_30 (Length: 382)
Name: NF1720_high_30
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 38887465 - 38887817
Alignment:
| Q |
1 |
ttagaaagtggcaatgaattgggtggggacaactgnnnnnnnnnnnnnnataacaacaaacaatagacaacaagagtgaagtagaaatgaaatgagcctt |
100 |
Q |
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| T |
38887465 |
ttagaaagtggcaatgaattgggtggggacaactgtatatata------ataacaacaaacaatagacaacaagagtgaagtagaaatgaaatgagcctt |
38887558 |
T |
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| Q |
101 |
gtgttatttctttatataatagaaaaagttttaatttccttattaatgctttcttgctcatggtttgtttttggtagttgaggaggtgagaataaagaaa |
200 |
Q |
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| T |
38887559 |
gtgttatttctttatataatagaaaaagttttaatttccttattaatgctttcttgctcatggtttgtttttggtagttgaggaggtgagaataaagaaa |
38887658 |
T |
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| Q |
201 |
gaggaagtgattatttctgatgaatgcatctatcatttcagtgttgttttgtcaaagccgaggttggaaaggaaggacatgtttgcagaagagaaagaca |
300 |
Q |
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| T |
38887659 |
gaggaagtgattatttctgatgaatgcatctatcatttcagtgttgttttgtcaaagccgaggttgggaaggaaggacatgtttgcagaagagaaagaca |
38887758 |
T |
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| Q |
301 |
tgtgcaattgatcaaagtgcaactcaactatatgctacatgggaatcctagtgctagtg |
359 |
Q |
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| T |
38887759 |
tgtgcaattgatcaaagtgcaactcaactatatgctacatgggaatgctagtgctagtg |
38887817 |
T |
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