View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_4 (Length: 713)
Name: NF1720_high_4
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 182 - 426
Target Start/End: Complemental strand, 50271214 - 50270970
Alignment:
| Q |
182 |
tcttactatcttttgcccattcattgttaagattctaatatgattaaatcacttaattagtgtatatatagagtgaaagtatagtcacattataacatat |
281 |
Q |
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| T |
50271214 |
tcttactatcttttgcccattcattgttaagattctaatatgattaaatcacttaattagtgtatatatagagtgaaagtatagtcacattataacatat |
50271115 |
T |
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| Q |
282 |
cttttttgtgcaatgtttagataactatagttaacacaaagtcaacaagattagagatagatttattctagttaaacgaaaatattctttgttctttttc |
381 |
Q |
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| T |
50271114 |
cttttttgtgcaatgtttagataactatagttaacacaaagtcaacaagattagagatagatttattctagttaaacgaaaatattctttgttctttttc |
50271015 |
T |
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| Q |
382 |
aaaattttaaccatcacctttttctaattgatcttcatattcatc |
426 |
Q |
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| T |
50271014 |
aaaattttaaccatcacctttttctaattgatcttcatattcatc |
50270970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 538 - 699
Target Start/End: Complemental strand, 50270868 - 50270707
Alignment:
| Q |
538 |
ctgaatttgcattatgtacgtgaagtgtgtaggtggtacaaaaactgatgtgtactgagcacgtgaactggtataagaatgatgtgtgaattgtttacat |
637 |
Q |
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| T |
50270868 |
ctgaatttgcattatgtacgtgaagtgtgtaggtggtacaaaaacttatgtgtactgagcacgtgaactggtataagaatgatgtgtgaattgtttacat |
50270769 |
T |
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| Q |
638 |
gaactatgtagtagtataggaactcacatatgacatagcccatatccaaaattataataaat |
699 |
Q |
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| T |
50270768 |
gaactatgtagtagtataggaactcacatatgacatagcccatatccaaaattataataaat |
50270707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 50271385 - 50271302
Alignment:
| Q |
11 |
catcatcatggttaggttactattctcttctaatgcgtcttctttcttcctttccccttttgtttcctacttgtacaacttaaa |
94 |
Q |
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| T |
50271385 |
catcatcatggttaggttactattctcttctaatgcgtcttctttcttcctttccccttttgtttcctacttgtacaacttaaa |
50271302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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