View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_45 (Length: 345)
Name: NF1720_high_45
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_45 |
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| [»] scaffold0103 (1 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 38315779 - 38315446
Alignment:
| Q |
1 |
tcaaacggtggatttgttcctttgattcatgagcgatgagttcctcccacaattttgatttaagcttttgatctgtgggtttattgtgttttacactgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38315779 |
tcaaacggtggatttgttcctttgattcatgagcgatgagtttctcccacaattttgatttaagcttttgatctgtgggtttattgtgttttacactgaa |
38315680 |
T |
|
| Q |
101 |
attacttgctaaaattgggttgttacattttcaggtcagttaatggtgttcttgcttaactgaaattgccagattgtgactaacaatggatactgaagcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38315679 |
attacttgctaaaattgggttgttacattttcaggtcagttaatggtgttcttgcttaactgaaattgccagattgtgactaacaatggatactgaagcg |
38315580 |
T |
|
| Q |
201 |
cggaaaattctgcacgatgtaagtagactagaaacctccgcaactttaatgaactgtggtttagtttggttgctgtgacttttgcatattttacttatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38315579 |
cggaaaattctgcacgatgtaagtagactagaaacctccgcaactttaatgaactgtggtttagtttggttgctgtgacttttgcatattttacttatga |
38315480 |
T |
|
| Q |
301 |
tagtctagaaattggtactagtactttgtttgat |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
38315479 |
tagtctagaaattggtactagtactttgtttgat |
38315446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 27 - 284
Target Start/End: Complemental strand, 2631980 - 2631725
Alignment:
| Q |
27 |
tcatgagcgatgagttcctcccacaattttgatttaagcttttgatctgtgggtttattgtgttttacactgaaattacttgctaaaattgggttgttac |
126 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||| |||| ||||||||| |
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| T |
2631980 |
tcatgagcgatgagtttctcccacaattttgatttaagctt--gatctgtgggtttgttgtgttttacacggtaattacttgctataatttggttgttac |
2631883 |
T |
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| Q |
127 |
attttcaggtcagttaatggtgttcttgcttaactgaaattgccagattgtgactaacaatggatactgaagcgcggaaaattctgcacgatgtaagtag |
226 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2631882 |
cttttcaggtcagttaatggtgctcttgtttaactgaaattgccagattgtgactaccaatggatactgaagcgcggaaaattctgcacgatgtaag--- |
2631786 |
T |
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| Q |
227 |
actagaaacctc-----cgcaactttaatgaactgtggtttagtttggttgctgtgacttttg |
284 |
Q |
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|||||||||| ||| ||||| |||||||||||||||||||||| || |||||||||| |
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| T |
2631785 |
--tagaaacctcgatttcgcgacttttatgaactgtggtttagtttggtcgccgtgacttttg |
2631725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 27 - 284
Target Start/End: Original strand, 8032 - 8287
Alignment:
| Q |
27 |
tcatgagcgatgagttcctcccacaattttgatttaagcttttgatctgtgggtttattgtgttttacactgaaattacttgctaaaattgggttgttac |
126 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||| |||| ||||||||| |
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| T |
8032 |
tcatgagcgatgagtttctcccacaattttgatttaagctt--gatctgtgggtttgttgtgttttacacggtaattacttgctataatttggttgttac |
8129 |
T |
|
| Q |
127 |
attttcaggtcagttaatggtgttcttgcttaactgaaattgccagattgtgactaacaatggatactgaagcgcggaaaattctgcacgatgtaagtag |
226 |
Q |
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| T |
8130 |
cttttcaggtcagttaatggtgctcttgattaactgaaattgccagattgtgactaccaatggatactaaagcgcggaaaattctgcacgatgtaag--- |
8226 |
T |
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| Q |
227 |
actagaaacctc-----cgcaactttaatgaactgtggtttagtttggttgctgtgacttttg |
284 |
Q |
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|||||||||| ||| ||||| |||||||||||||||||||||| || |||||||||| |
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| T |
8227 |
--tagaaacctcgatttcgcgacttttatgaactgtggtttagtttggtcgccgtgacttttg |
8287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 45120 - 44970
Alignment:
| Q |
1 |
tcaaacggtggatttgttcctttgattcatgagcgatgagttcctcccacaattttgatttaagcttttgatctgtgggtttattgtgttttacactgaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||||||| | |
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| T |
45120 |
tcaaacggtggatttgttcctttgattcatgagtgatgagtttctcccacaattttgatttaagc--ttgatatgtgggtttgttgtgttttacactcta |
45023 |
T |
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| Q |
101 |
attacttgctaaaattgggttgttacattttcaggtcagttaatggtgttctt |
153 |
Q |
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|||| |||||| |||| ||| ||||| |||||| |||||||||||||| |||| |
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| T |
45022 |
attatttgctataatttggtagttaccttttcaagtcagttaatggtgctctt |
44970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 44936 - 44845
Alignment:
| Q |
243 |
actttaatgaactgtggtttagtttggttgctgtgacttttgcatattttacttatgatagtctagaaattggtactagtactttgtttgat |
334 |
Q |
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||||| |||||||||||||||||||| | || ||||||||||||||||| |||||| ||||||| |||||||||| | ||| |||||||||| |
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| T |
44936 |
acttttatgaactgtggtttagtttgatcgccgtgacttttgcatatttcacttatcatagtctggaaattggtatttgtattttgtttgat |
44845 |
T |
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