View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_47 (Length: 343)
Name: NF1720_high_47
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 54303386 - 54303067
Alignment:
| Q |
13 |
tcatcaagtttaccccagccagtgttcaaattttggatattgagatatacaacataaatacgaggatcatacatggctttcaacaaattatcgcaaattt |
112 |
Q |
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| T |
54303386 |
tcatctagtttaccccaaccagtgttcaaattttggatattgagatatacaacataaatacgaggatcatacatggctttcaacaaattatcgcaaattt |
54303287 |
T |
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| Q |
113 |
gaagaacactgccgtttttaacacactctgaggggagtgctagtagagtcttaagtttaaccagatacttcttcaatcaagcctgagtgtggaatgaaat |
212 |
Q |
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| T |
54303286 |
gaagaacactgccgtttttaacacactcagaggggagtgctagtagagtcttaagtttaaccagatgcttcttcaatcaagcctgagtgtggaatggaat |
54303187 |
T |
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| Q |
213 |
caaaatctccggttggataatcaacatccttgacggaagaagaggaaaagtttccttccaaattgaatggtttgtgaatcggagcagaagatatcaagca |
312 |
Q |
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| T |
54303186 |
caaaatctccggttggataatcaacatccttgacggaagaagaggaaaagtttccttccaaattgaatggtttgtgaatcggagcagaagatatcaagcg |
54303087 |
T |
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| Q |
313 |
atcaataatagaagatgatg |
332 |
Q |
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| T |
54303086 |
atcaataatagaagatgatg |
54303067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 45883462 - 45883520
Alignment:
| Q |
55 |
agatatacaacataaatacgaggatcatacatggctttcaacaaattatcgcaaatttg |
113 |
Q |
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| T |
45883462 |
agatacacaccagaaatacgaggatcataagctgctttcaacaaattatcgcaaatttg |
45883520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 7973692 - 7973738
Alignment:
| Q |
68 |
aaatacgaggatcatacatggctttcaacaaattatcgcaaatttga |
114 |
Q |
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| T |
7973692 |
aaatacgaggatcataagcggctttcaacaaattctcgcaaatttga |
7973738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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