View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1720_high_5 (Length: 702)
Name: NF1720_high_5
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 26 - 692
Target Start/End: Original strand, 25828031 - 25828698
Alignment:
| Q |
26 |
ccagctctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccag |
125 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||||| | ||||||||||||||||| | ||||||||||||| ||||||||||||||||||| | |||| |
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| T |
25828031 |
ccagttctggcgtgaaacgttgtaaaaacaaaaagatcgattttgcttccaaactactatcactgacaatctattgaatgtcgttccaaaggacagccat |
25828130 |
T |
|
| Q |
126 |
aatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggccttggacacct |
225 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| |||||||| || ||||| |||||||||| |
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|
| T |
25828131 |
aatccaaacttacattgtaaatgggcaagtaaaaaacatgtgagccatatcctaatcataagaaacacaaccaacacactctaaagggcattggacacct |
25828230 |
T |
|
| Q |
226 |
ttatcctataaacgaactcttgtagacaaacgacctcaacacattatccaaactaagtgtttgattttcgggagaacctttaaccgccaaatccggctca |
325 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| ||||| ||||||| | || |||||||||||||||||| ||||||||| ||||||||| |||||||||| |
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|
| T |
25828231 |
ttatcctgtaaacgaactcgtgtaggcaaacaacctcgacacattcttcagactaagtgtttgattttcaggagaacctctaaccgccatatccggctca |
25828330 |
T |
|
| Q |
326 |
gaaacctggtcttcaaagatgcgatgtatccaccaaacattccatacaaagcctatatacactttttacataatattcaccatccttttcagcttttcaa |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |
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|
| T |
25828331 |
gaaacctggtcttcaaagatgcgatgtatccaccaaaccttccatacaaagcctatatacactttttacataatactcgccatccttttcagctttccaa |
25828430 |
T |
|
| Q |
426 |
atcaatttgtcatctgacacctaatcaaatatatcgcaaaatactagaagcaatatccgggctaaaaacttgattaatcaaatcatggttccatacctta |
525 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
25828431 |
atcaatttatcatctgacacctaatcaaatatatcgcaaaatactagaagcaatattcgggctaaaaacatgatgaatcaaatcatggttccataccttt |
25828530 |
T |
|
| Q |
526 |
tgcgcaggaactatcggactagcaacacaaaaattacgaagatggtatgtgtttggcatattaccatcaatgtggtcaccagtaacaagcc--aaggttc |
623 |
Q |
| |
|
||| |||||| ||| ||||||||||| ||||||||| || ||||||| |||||||||||||||||||||| |||||||| | ||||||| ||||||| |
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|
| T |
25828531 |
cgcgtaggaaccatcagactagcaacagaaaaattacaaacatggtatatgtttggcatattaccatcaatacggtcacca-ttacaagccaaaaggttc |
25828629 |
T |
|
| Q |
624 |
atcaagaatggaaataaaaatacttggccctatgctccatcaaacactcccttgaactattcccctttg |
692 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
25828630 |
atcaagaatggaaataaaagtacttggtcctatgcaccatcaaacacccccttgaactattcccctttg |
25828698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 25669551 - 25669885
Alignment:
| Q |
18 |
acaagcatccagctctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaagg |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25669551 |
acaagcatccagttctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaagg |
25669650 |
T |
|
| Q |
118 |
tcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggcctt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25669651 |
tcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccaaatcctaatcagaagaaacacaactaacacactttatagggcctt |
25669750 |
T |
|
| Q |
218 |
ggacacctttatcctataaacgaactcttgtagacaaacgacctcaacacattatccaaactaagtgtttgattttcgggagaacctttaaccgccaaat |
317 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||| ||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
25669751 |
ggacacctttatcctgtaaacgaactcgtgtaggcaaacgatctcgacacattccccgaactaagtgtttgattttcgggagaacttttaaccgccaaat |
25669850 |
T |
|
| Q |
318 |
ccggctcagaaacctggtcttcaaagatgcgatgt |
352 |
Q |
| |
|
|||||||| ||||||| |||||| |||| ||||| |
|
|
| T |
25669851 |
ccggctcataaacctgaccttcaatgatgtgatgt |
25669885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 31 - 270
Target Start/End: Original strand, 25429567 - 25429806
Alignment:
| Q |
31 |
tctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatcc |
130 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| | || || | ||||||||||||| ||||| ||||||||||||||||||||| ||| ||| ||||| |
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|
| T |
25429567 |
tctgccgtgaaacgttgtaacaacaaaaagatcgcttctgttgtcaaactagtgtcagtgacagtctgttgaatgtcgttccaaatgtcagcctcaatcc |
25429666 |
T |
|
| Q |
131 |
aaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggccttggacacctttatc |
230 |
Q |
| |
|
||||||| |||| |||||| |||||| | ||| |||||||| ||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
25429667 |
aaacttggattgcaaatggcgaagtaaaagacacgtgagccaaatcttaatcagaagaaacacaactaacacactttgtagggcattggacacctttatc |
25429766 |
T |
|
| Q |
231 |
ctataaacgaactcttgtagacaaacgacctcaacacatt |
270 |
Q |
| |
|
|| |||||||||| |||||| ||||| |||||| |||||| |
|
|
| T |
25429767 |
ctctaaacgaacttttgtaggcaaacaacctcagcacatt |
25429806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 31 - 270
Target Start/End: Complemental strand, 24889345 - 24889106
Alignment:
| Q |
31 |
tctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatcc |
130 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||| | || || | ||||||||||||| ||||| ||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
24889345 |
tctgccgtgaaacgttgtaacaacataaagatcgcttctgttgtcaaactagtgtcagtgacagtctgttgaatgtcgttccaaatgtcagcctcaatcc |
24889246 |
T |
|
| Q |
131 |
aaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggccttggacacctttatc |
230 |
Q |
| |
|
||||||| |||| |||||| |||||| | ||| |||||||| ||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
24889245 |
aaacttggattgcaaatggcgaagtaaaagacacgtgagccaaatcttaatcagaagaaacacaactaacacactttgtagggtattggacacctttatc |
24889146 |
T |
|
| Q |
231 |
ctataaacgaactcttgtagacaaacgacctcaacacatt |
270 |
Q |
| |
|
|| |||||||||| |||||| ||||| ||||| ||||||| |
|
|
| T |
24889145 |
ctctaaacgaacttttgtaggcaaacaacctcgacacatt |
24889106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 74 - 287
Target Start/End: Original strand, 25472307 - 25472515
Alignment:
| Q |
74 |
ccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccag |
173 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| |||||||||| | ||||||| ||||||||||| ||||||||||||||||| | ||| |||||||| |
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|
| T |
25472307 |
ccaaactagtgtcattgacaatctattgaatgttgttccaaaggccagccagaa-ccaaacttgcaatgtaaatgggcaagtaaaagacaagtgagccaa |
25472405 |
T |
|
| Q |
174 |
atcctaatcagaagaaacacaactaacacactttatagggccttggacacctttatcctataaacgaactcttgtagacaaacgacctcaacacattatc |
273 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| || |||||||||||||| ||||||||||| ||||| ||||| ||| ||||||| | |
|
|
| T |
25472406 |
atcctaattagaagaaacacaactaacacac----tagggcattagacacctttatcctgtaaacgaactcgtgtaggcaaacaaccaagacacattctt |
25472501 |
T |
|
| Q |
274 |
caaactaagtgttt |
287 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
25472502 |
cagactaagtgttt |
25472515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 289 - 474
Target Start/End: Complemental strand, 24888411 - 24888224
Alignment:
| Q |
289 |
attttcgggagaacctttaaccgccaaatccggctcagaaacctggtcttcaaagatgcgatgtatccaccaaacattccatacaaagcctatatacac- |
387 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| || ||||||||||||||| || |||||||||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
24888411 |
attttcgggaaaacctttaaccgctaaatccagcccagaaacctggtctttgaaaatgcgatgtatccaccgaaccttccatacaaagcctatagacact |
24888312 |
T |
|
| Q |
388 |
-----tttttacata--atattcaccatccttttcagcttttcaaatcaatttgtcatctgacacctaatcaaatatatcgcaaaatactagaa |
474 |
Q |
| |
|
|||||||||| ||| ||| | |||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
24888311 |
ttttatttttacatatcatactcatcgtccttttctgctttccaaatcaatttgtcatctg------aatcaaacatatcgcaaaatactagaa |
24888224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 300 - 393
Target Start/End: Original strand, 25430519 - 25430612
Alignment:
| Q |
300 |
aacctttaaccgccaaatccggctcagaaacctggtcttcaaagatgcgatgtatccaccaaacattccatacaaagcctatatacacttttta |
393 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || ||| | |||||||||||||||| ||| |||||||||||||| |||||||||||||| |
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|
| T |
25430519 |
aacctttaaccgccaaatccagcctagaaacctagttttcggaaatgcgatgtatccaccgaaccttccatacaaagcccatatacacttttta |
25430612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 426 - 465
Target Start/End: Original strand, 25430617 - 25430656
Alignment:
| Q |
426 |
atcaatttgtcatctgacacctaatcaaatatatcgcaaa |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25430617 |
atcaatttgtcatctgacacctaatcaaacatatcgcaaa |
25430656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 348 - 444
Target Start/End: Complemental strand, 14230099 - 14230003
Alignment:
| Q |
348 |
gatgtatccaccaaacattccatacaaagcctatatacactttttacataatattcaccatccttttcagcttttcaaatcaatttgtcatctgaca |
444 |
Q |
| |
|
|||||||||| ||||| || ||| |||||| |||| ||||||||| | |||| ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
14230099 |
gatgtatccatcaaaccttacatgcaaagcttatacgcactttttagagaatactcaccatccttttcagcttttcagatcaatttgtcatctgaca |
14230003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 41837475 - 41837399
Alignment:
| Q |
138 |
cattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggc |
214 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||| || |||| ||| ||||| ||||||||||||| ||| |||||| |
|
|
| T |
41837475 |
cattgcaaatgggcaagtaaaaaacatgcgagtcaagtcctcatcgaaagaatcacaactaacacaatttgtagggc |
41837399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 129 - 416
Target Start/End: Complemental strand, 25983840 - 25983546
Alignment:
| Q |
129 |
ccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggccttggacaccttta |
228 |
Q |
| |
|
|||||||||||| | ||||||||||||| || ||| |||| || ||||| || |||| || |||| |||||| || ||| || ||||||||||||| |
|
|
| T |
25983840 |
ccaaacttgcatcgcaaatgggcaagtacaaatcatatgagtcaaatcctcataagaaaaatcacatttaacactct--ataatgcattggacaccttta |
25983743 |
T |
|
| Q |
229 |
tcctataaacgaactcttgtagacaaacgacctcaacacattatccaaactaagtgtttgattttcgggagaacctttaaccgccaaat-ccggctcaga |
327 |
Q |
| |
|
|| | ||||||||| | |||||||||| | | | ||||||| || ||||||| ||||| ||||||||||||| || || |||||| || | |||| |
|
|
| T |
25983742 |
tcttttaaacgaacccacgtagacaaacaatcccgacacattcgtcatactaagtttttgactttcgggagaaccattcgcctccaaataccagaccaga |
25983643 |
T |
|
| Q |
328 |
aacctggtcttcaaagatgcgatgtatccaccaaa--------cattccatacaaagcctatatacactttttacataatattcaccatccttttca |
416 |
Q |
| |
|
| ||||||| ||||||| |||||||||||||| | ||||||||||||| | || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
25983642 |
atcctggtcacagaagatgcaatgtatccaccaaatgaccaaaccttccatacaaagcttgtacacactttttacataatactcaccatccttttca |
25983546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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