View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_51 (Length: 329)
Name: NF1720_high_51
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 42664318 - 42664631
Alignment:
| Q |
1 |
taccttgtggagatggaaggatgcatcaccaatttcaataataacatcacttggaagtccagtagagcagagcctagagatggagatttaagatacaaca |
100 |
Q |
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| T |
42664318 |
taccttgtggagatggaaggatgcatcaccaatttcaataataacatcacttggaagtccagtagagcagagcctagagatggagatttaagatacaaca |
42664417 |
T |
|
| Q |
101 |
atgttaatgatcataaaccataatgatatttacctcataaaaatggtgaattatgtgtagaataggataatgtaatgtaattaaaataattcgtaactat |
200 |
Q |
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| T |
42664418 |
atgttaatgatcataaaccataatgatatttacctcataaaaatggtgaattatgtgtagaataggataatgtaatgtaattaaaataattcgtaactat |
42664517 |
T |
|
| Q |
201 |
cagattgtgaatttaatcgaccaacgtgcagaattaaacatttcnnnnnnnc-ttcttcatggtagcaatctagcatagactagaatcgaaagactctct |
299 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
42664518 |
cagattgtgaatttaatcgaccaacgtgcataattaaacatttctctttttctttcttcatggtagcaatctagcatggactagaatcgaaaaactctct |
42664617 |
T |
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| Q |
300 |
tcaattaccaatat |
313 |
Q |
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|||||||||||||| |
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| T |
42664618 |
tcaattaccaatat |
42664631 |
T |
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