View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1720_high_57 (Length: 308)
Name: NF1720_high_57
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_57 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 23034076 - 23034030
Alignment:
| Q |
116 |
gatcgtacaaatatcatttgtcatatagaaaccacaattatttacat |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23034076 |
gatcgtacaaatatcatttgtcatatagaaaccacaattatttacat |
23034030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 23033923 - 23033887
Alignment:
| Q |
255 |
tttgtcattaagagttaattagatatataaggaaatt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23033923 |
tttgtcattaagagttaattagatatataaggaaatt |
23033887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University