View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_60 (Length: 300)
Name: NF1720_high_60
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 29647718 - 29647971
Alignment:
| Q |
17 |
ttacaaaggttacaaatgcaacaaagaagtgcttgctattgcaaaaacaatgcccgagctacgacatcttgagctttggggaaacaaactcaccaatgac |
116 |
Q |
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| T |
29647718 |
ttacaaaggttacaaatgcaacaaagaagcgcttgctattgcaaaaacaatgcccgagctacgacatcttgagctttggggaaacaaactcaccaatgat |
29647817 |
T |
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| Q |
117 |
ggtctaattgctattcttgatggttgtccttaccttgaatctcttgatgttcgaatgtgttgcaatctagttattcatggaaatttggcgaaaaggtgtt |
216 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
29647818 |
ggtctaattgctatccttgatggttgtccttaccttgaatctcttgatgttcgaatgtgctacaatctagttattcatggaaatttggcgaaaaggtgtt |
29647917 |
T |
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| Q |
217 |
ttgagaatactaggataaaatattttaggtatccaactgagtatataaatggat |
270 |
Q |
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| T |
29647918 |
ttgagaatactaggataaaatattttaggtatccaactgagtatataaatggat |
29647971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 29639697 - 29639950
Alignment:
| Q |
17 |
ttacaaaggttacaaatgcaacaaagaagtgcttgctattgcaaaaacaatgcccgagctacgacatcttgagctttggggaaacaaactcaccaatgac |
116 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || || |
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| T |
29639697 |
ttacaaaggttacaaatgcaacaaagaagcgcttgctattgcaaaaacaatgcccgagctacgggatcttgagctatggggaaacaaactcacgaacgat |
29639796 |
T |
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| Q |
117 |
ggtctaattgctattcttgatggttgtccttaccttgaatctcttgatgttcgaatgtgttgcaatctagttattcatggaaatttggcgaaaaggtgtt |
216 |
Q |
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| T |
29639797 |
ggtttaattgctatttttgatggttgtccttacctcgaatctcttgatgttcgtatgtgttacaatctagttattcatggaaatttggcgaaaagatgtt |
29639896 |
T |
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| Q |
217 |
ttgagaatactaggataaaatattttaggtatccaactgagtatataaatggat |
270 |
Q |
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|||| ||| ||||| | ||||||||||||||||||| ||||||||||||||||| |
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| T |
29639897 |
ttgaaaattctagggtgaaatattttaggtatccaaatgagtatataaatggat |
29639950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 6046842 - 6046880
Alignment:
| Q |
125 |
tgctattcttgatggttgtccttaccttgaatctcttga |
163 |
Q |
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| T |
6046842 |
tgctattcttgatggttgtcctcaccttgaatctcttga |
6046880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 6043541 - 6043579
Alignment:
| Q |
125 |
tgctattcttgatggttgtccttaccttgaatctcttga |
163 |
Q |
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| T |
6043541 |
tgctattcttgatggttgtcctctccttgaatctcttga |
6043579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 1152433 - 1152396
Alignment:
| Q |
49 |
ttgctattgcaaaaacaatgcccgagctacgacatctt |
86 |
Q |
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| T |
1152433 |
ttgctattgcaaaaacaatgtccgggctacgacatctt |
1152396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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