View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_63 (Length: 292)
Name: NF1720_high_63
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_63 |
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Alignment Details
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 31596014 - 31595898
Alignment:
| Q |
4 |
caattacgttaaaagttagcaacaaaaattagtgaatnnnnnnntt-ctctttcattctcttgtcattaaatttaatgacaaaactatagataggtttta |
102 |
Q |
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| T |
31596014 |
caattacattaaaagttagcaacaaaaattagtgaagaaaaaaaataccctttcattctcttgtcattaaatttaatgacaaaactatagatacgtttca |
31595915 |
T |
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| Q |
103 |
caattttttctctccaa |
119 |
Q |
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| T |
31595914 |
caattttttctctccaa |
31595898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 31595882 - 31595840
Alignment:
| Q |
228 |
ctacagtggaataagagtcagttatttctttgacgagtctacc |
270 |
Q |
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| T |
31595882 |
ctacagtggaataagagtcagttatttctttgacgagtctacc |
31595840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 31580098 - 31579985
Alignment:
| Q |
145 |
ctaaaactagatattatgctagccaaaatcaacatatgggtaggcgagtttcacacgtttgatagcag-gttagacgagcgctactacagtggaataaga |
243 |
Q |
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| T |
31580098 |
ctaaaattagatattatgttagccaaaatcgagagatagataggcgagtttcacacgttcggtagcagaatttggcaatcgctactatagtgaaataaga |
31579999 |
T |
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| Q |
244 |
gtcagttatttctt |
257 |
Q |
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| T |
31579998 |
gccagtcatttctt |
31579985 |
T |
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