View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_7 (Length: 605)
Name: NF1720_high_7
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 83 - 383
Target Start/End: Complemental strand, 32852718 - 32852419
Alignment:
| Q |
83 |
attttatatattacatgtcacacttgctttatgtttaaattttattacattaataaactacaggtccacagctgaatcaatagtgttttct-gacaggtt |
181 |
Q |
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| T |
32852718 |
attttatatattacatgtcacacttgctttatgtttaaattttattacattaataaacta--ggtccacagctgaatcaatagtgtttttttgacagctt |
32852621 |
T |
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| Q |
182 |
gcagcaataaacataaaactataactaattcattttagtcatgcatatgttctctaatatatgatcaatgtttaagtgtgtgtgtctgatatttgtagta |
281 |
Q |
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| T |
32852620 |
gtagcaataaacataaaactataactaattcattttagtcatgcatatgttctctaatatatgatcaatgtttaagtgtgtgtgtctgatatttgtagta |
32852521 |
T |
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| Q |
282 |
aaatcaggtaatgtgtggaaagtgacaagaaaatagtgtggttcttgtaatatagttatcattttagtcccttagttattatttttcaaaatggtctttg |
381 |
Q |
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| T |
32852520 |
aaatcaggtaatgtgtggaaagtgacaagaaaatagtgtggttcttgtaatatagttatcattttagtcccttaattattatttttcaaaatggtctttg |
32852421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 484 - 603
Target Start/End: Complemental strand, 32852353 - 32852234
Alignment:
| Q |
484 |
gcatttcaaaccctacatggccatttgaacatgaaaaatatcactttcactaaacaaaattgcatttcagtccccatagaaattaaattaatttgaagaa |
583 |
Q |
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| T |
32852353 |
gcatttcaatccctacatgaccatttgaacatgaaaaatatcacattcactaaacaaaattgcatttcagtccctatagaaattaaattaatttgaagaa |
32852254 |
T |
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| Q |
584 |
ctcgtcaaagcttaaatgat |
603 |
Q |
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| T |
32852253 |
ctcgtcaaagcttaaatgat |
32852234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 32852814 - 32852734
Alignment:
| Q |
18 |
gggtgaaaaagcttcaagcgtgggagctatgggctcgcacgttcctgctattcttgttgttgttaattttatatattacat |
98 |
Q |
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| T |
32852814 |
gggtgaaaaagcttcaagcgtgggagctatgggctcgcacgttcctgctattcttgttgttgttaatgttatatattacat |
32852734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 557
Target Start/End: Complemental strand, 32846902 - 32846666
Alignment:
| Q |
317 |
gtgtggttcttgtaatatag--ttatcattttagtcccttagttattatttttcaaaatggtctttgtgnnnnnnnnnttatttcattttggtcctaaat |
414 |
Q |
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| T |
32846902 |
gtgtggtccttgtaatatatactaatcattttagtcccttaattatt-tttttcaaaatggtccttgtaaaaaaata--tatttcattttggtcctaaaa |
32846806 |
T |
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| Q |
415 |
aatttgctctagtcctcaaaagtaaaataattaaatttcatgttagcccctataattcgcnnnnnnnnngcatttcaaaccctacatggccatttgaaca |
514 |
Q |
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| T |
32846805 |
aatttgttctggtccttaaaaataaaataattaattttcattttagcccttatgattaac---ttttttgcatttcagtccctatatgaccaattgaaca |
32846709 |
T |
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| Q |
515 |
tgaaaaatatcactttcactaaacaaaattgcatttcagtccc |
557 |
Q |
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| T |
32846708 |
tgaaaaatgtcatattgactaaaaaaaattgtatttcagtccc |
32846666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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