View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_8 (Length: 589)
Name: NF1720_high_8
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 10 - 574
Target Start/End: Original strand, 30097773 - 30098356
Alignment:
| Q |
10 |
aacaatatcagttaaactcttactactaaactaacacctcaagtgtttagcattaattacttatacactctagcaattagtacc---------------- |
93 |
Q |
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| T |
30097773 |
aacaatgtgagttaaactcttactactaaactaacacctcaagtgtttagcattaattacttatacactctagcaattagtacctaatttgattagcatt |
30097872 |
T |
|
| Q |
94 |
---caatatacttcattatgtttggcctaannnnnnngcaaggagaatctagactaggaggaattgaggacacaaaggcaggttaagtttggcaactgtg |
190 |
Q |
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| T |
30097873 |
ttccaatatacttcattatgtttggcttaatttttttgcaaggagaatctagactaggaagaattgaggacacaaaggcaggttaagtttggcaactgtg |
30097972 |
T |
|
| Q |
191 |
tctgtcagttttcatgattgacacttaggagaatgaattgtgacagatggtcgcaaggattagtcatcatttacttagaggaatatatcacgaaaaaata |
290 |
Q |
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| T |
30097973 |
tctgtcagttttcatgattgacacttaggagaatgaattgtgacagatggatgcaaggattagtcatcatctatttaaaggaatatatcacgaaaaaata |
30098072 |
T |
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| Q |
291 |
gaggatgcaatgtgttacatacttattgagtaggttctggttggaattagaaagtaatatagtatgcttttcaaatgagaaatgttactaaaaatacaga |
390 |
Q |
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| T |
30098073 |
gtggttgccatgtgttacatacttattgtgtaggttctggttggaatttgaaagtaatatagtatgcttttcaaatgagaaatgttactaaaaatacaga |
30098172 |
T |
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| Q |
391 |
cttttcattttcacatactaaatttatcatattatttcactctaacaaaagggagaaatttagtagaaaggaatgataatcaatcacgctgtaaaactaa |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098173 |
cttttcattttcacatactaaatttatcatattatttcactctaacaaaagggagaaatttagtagaaaggaatgataatcaatcacgctgtaaaactaa |
30098272 |
T |
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| Q |
491 |
aatatataaaagtttggtgattgtccataccacagtagacttcaaatgtagtatagcagaaagtttgtatgattcagttatttg |
574 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098273 |
aatctataaaagtttggtgagtgtccataccacagtagacttcaaatgtagtatagcagaaagtttgtatgattcagttatttg |
30098356 |
T |
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