View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1720_high_81 (Length: 249)
Name: NF1720_high_81
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_81 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 25064183 - 25064406
Alignment:
| Q |
1 |
actatatcagcctacatcaaatcaatgttaggttttccnnnnnnnnttgtgagagtgatataagttttataatttctaataattgcatatatannnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
25064183 |
actatatcagcctacatcaaatcaatgttaggttttccaaaaaaaattgtgacagtgatataagttttataatttctaatatttgcctatatat------ |
25064276 |
T |
|
| Q |
101 |
nnnnnagagattatctaaaatcttatttttcataggcaatattcaattataagtgaaaaatttataagtgcaacttatactttgaaagatcgaagagact |
200 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| ||||||||| |||||||||| |
|
|
| T |
25064277 |
------gtgattatctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagaccgaagagact |
25064370 |
T |
|
| Q |
201 |
tttgatct--tagagtgtagattcgaactcgttttt |
234 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||| |
|
|
| T |
25064371 |
tttgatattctagaacatagattcgaactcgttttt |
25064406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 25085705 - 25085832
Alignment:
| Q |
109 |
gattatctaaaatcttatttttcataggcaatattcaattataagtgaaaaatttataagtgcaacttatactttgaaagatcgaagagacttttgatct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| ||||||||| |||| ||||||||||| | |
|
|
| T |
25085705 |
gattatctaaaatcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagaccgaaaagacttttgatat |
25085804 |
T |
|
| Q |
209 |
--tagagtgtagattcgaactcgttttt |
234 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
25085805 |
tctagaacatagattcgaactcgttttt |
25085832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 25085567 - 25085663
Alignment:
| Q |
1 |
actatatcagcctacatcaaatcaatgttaggttttccnnnnnnnnttgtgagagtgatataagttt-----tataatttctaataattgcatatata |
93 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25085567 |
actatatcagcctacattaaatcaatgttaggtcttccaaaaaat-ttgtgagagtgatataagtttaattttataatttctaataattgcatatata |
25085663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 25091461 - 25091489
Alignment:
| Q |
1 |
actatatcagcctacatcaaatcaatgtt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25091461 |
actatatcagcctacatcaaatcaatgtt |
25091489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University