View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1720_high_82 (Length: 249)
Name: NF1720_high_82
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_82 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39098762 - 39098524
Alignment:
| Q |
1 |
tctagatatatcacattggtacataacataaagagggccatagagtctccccaataattggaaacattaaagtttttagaataaaaaagctagacatgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39098762 |
tctagatatatcacattggtacataacataaagagggccatagagtctccccaataattggaaacattaaagtttttagaataaaaaagctagacatgta |
39098663 |
T |
|
| Q |
101 |
gacttttttcttgatcattttgagccccccttaaaatatgtcagccttaggcaaagccttatcttagaataatatgtatagttataagatgaagagaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39098662 |
cacttttttcttgatcattttgagccccccttaaaatatgtcagccttaggcaaagccttatcttagaataatatgtatagttataagatgaagagaaaa |
39098563 |
T |
|
| Q |
201 |
ataaaatatctttttctagtttgcttgttatattctctg |
239 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39098562 |
ataaaatctctttttctagtttgcttgttatattctctg |
39098524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University