View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_86 (Length: 243)
Name: NF1720_high_86
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_86 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 43842744 - 43842511
Alignment:
| Q |
18 |
cttgattttgctaaattttagtgattgtttctgttcctttaccacacacagtactagcttatatataaatcaggttttccaaatttctttgtttaggatt |
117 |
Q |
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| T |
43842744 |
cttgattttgctaaattttagtgattgtttctgttcctttaccacacacagtactagcttatatataaatcaggttttccaaatttctttgtttaggatt |
43842645 |
T |
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| Q |
118 |
--------ttaattgagtcnnnnnnnnnnnngaattttgattttgattgatattcgcttctttaattgagattttatcattaatagaaaaatgtgcata- |
208 |
Q |
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| T |
43842644 |
ttaaatttttaattgagtcaaaaagaaaaaagaattttgattttgattgataatggcttctttaattgagattttatcattaatagaaaaatgtgcataa |
43842545 |
T |
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| Q |
209 |
--ttagtatatgataatgatattttagggtcttgtta |
243 |
Q |
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| T |
43842544 |
atatagtatatgata---atattttagggtcttgtta |
43842511 |
T |
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