View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_high_87 (Length: 243)

Name: NF1720_high_87
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_high_87
NF1720_high_87
[»] chr5 (7 HSPs)
chr5 (93-242)||(43233569-43233700)
chr5 (16-82)||(43233468-43233534)
chr5 (189-242)||(21256433-21256486)
chr5 (189-242)||(41949638-41949691)
chr5 (189-243)||(17823335-17823389)
chr5 (18-146)||(31983033-31983155)
chr5 (189-240)||(15543955-15544006)
[»] chr7 (4 HSPs)
chr7 (189-242)||(7737093-7737146)
chr7 (189-242)||(41832418-41832472)
chr7 (197-243)||(34512642-34512688)
chr7 (193-238)||(219320-219364)
[»] chr2 (2 HSPs)
chr2 (189-242)||(24039271-24039324)
chr2 (189-242)||(31269734-31269787)
[»] scaffold0525 (1 HSPs)
scaffold0525 (189-242)||(2301-2354)
[»] chr4 (2 HSPs)
chr4 (193-242)||(11814932-11814981)
chr4 (204-242)||(5444519-5444557)
[»] chr1 (2 HSPs)
chr1 (190-242)||(9906092-9906144)
chr1 (193-238)||(35267763-35267808)
[»] chr8 (3 HSPs)
chr8 (18-77)||(8024419-8024478)
chr8 (204-242)||(7275416-7275454)
chr8 (95-146)||(8024521-8024572)
[»] chr6 (3 HSPs)
chr6 (18-77)||(18647642-18647701)
chr6 (95-146)||(18647744-18647795)
chr6 (197-237)||(6823297-6823337)
[»] scaffold0263 (1 HSPs)
scaffold0263 (208-242)||(22723-22757)
[»] scaffold0862 (1 HSPs)
scaffold0862 (194-242)||(39-88)
[»] chr3 (2 HSPs)
chr3 (199-234)||(10745417-10745452)
chr3 (197-238)||(4607257-4607298)
[»] scaffold1412 (1 HSPs)
scaffold1412 (197-237)||(25-65)
[»] scaffold0001 (1 HSPs)
scaffold0001 (197-237)||(144923-144963)


Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 242
Target Start/End: Original strand, 43233569 - 43233700
Alignment:
Q  93 tcaaattttgaccactcatcgaagaatagagatataaatacgggcaatattagatcatagtctttgataattgttcnnnnnnngaaaagaagaacacctc 192  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||                  || |||||||||||    
T  43233569 tcaaattttgaccactcattgaagaatagagatataaatacgggcaatattagatcatagtccttgat------------------aaaaagaacacctc 43233650  T
Q  193 caagtggttaaaccttgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43233651 caagtggttacaccttgagttgtggtttcctcttgttggataagcatttg 43233700  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 43233468 - 43233534
Alignment:
Q  16 tgcagctccaagaattagcttctaaatcattatttgaccctgattcaactcagttttggtcaagttg 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43233468 tgcagctccaagaattagcttctaaatcattatttgaccctgattcaactcagttttggtcaagttg 43233534  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 21256433 - 21256486
Alignment:
Q  189 cctccaagtggttaaaccttgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21256433 cctccaagtggttacaccttgagttgtggtttcctcttgttggataagcatttg 21256486  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 41949691 - 41949638
Alignment:
Q  189 cctccaagtggttaaaccttgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  41949691 cctccaagtggttacacattgagttgtggtttcctcttgttggataagcatttg 41949638  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 17823335 - 17823389
Alignment:
Q  189 cctccaagtggttaaaccttgagttgtggtttcctcttgttggataagcatttgc 243  Q
    |||||||||||||||||||||| || ||||||| |||||||| ||||||||||||    
T  17823335 cctccaagtggttaaaccttgaattatggtttcttcttgttgaataagcatttgc 17823389  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 31983033 - 31983155
Alignment:
Q  18 cagctccaagaattagcttctaaatcattatttgaccctgattcaactcagttttggtcaagttgatagttttggtcaaattttgaccactcatcgaaga 117  Q
    ||||||||  |||||||||||||||||||||||||||||| || | |||||||| |||| ||||     || |  | ||||||||||||||||||||| |    
T  31983033 cagctccattaattagcttctaaatcattatttgaccctgtttaagctcagtttaggtc-agtt-----ttgtattaaaattttgaccactcatcgaaaa 31983126  T
Q  118 atagagatataaatacgggcaatattaga 146  Q
    ||| || |||||||||  |||| ||||||    
T  31983127 atataggtataaatacaagcaacattaga 31983155  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 15544006 - 15543955
Alignment:
Q  189 cctccaagtggttaaaccttgagttgtggtttcctcttgttggataagcatt 240  Q
    |||||||| || |||||||| |||||||||||| | ||||||||||||||||    
T  15544006 cctccaagcgggtaaaccttaagttgtggtttctttttgttggataagcatt 15543955  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 7737093 - 7737146
Alignment:
Q  189 cctccaagtggttaaaccttgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7737093 cctccaagtggttaaaccttgagttgtggtttcctcttgttgaataagcatttg 7737146  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 41832418 - 41832472
Alignment:
Q  189 cctccaagtggttaaacc-ttgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  41832418 cctccaagtggttacacccttgagttgtggtttcctcttgttggataagcatttg 41832472  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 34512642 - 34512688
Alignment:
Q  197 tggttaaaccttgagttgtggtttcctcttgttggataagcatttgc 243  Q
    ||||| ||||||||||||||||| | |||||||||||||||| ||||    
T  34512642 tggttcaaccttgagttgtggttgcttcttgttggataagcacttgc 34512688  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 219364 - 219320
Alignment:
Q  193 caagtggttaaaccttgagttgtggtttcctcttgttggataagca 238  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||    
T  219364 caagcggttaaaccttgagttgt-gtttcttcttgttggataagca 219320  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 24039271 - 24039324
Alignment:
Q  189 cctccaagtggttaaaccttgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24039271 cctccaagtggttacaccttgagttgtggtttcctcttgttggataagcatttg 24039324  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 31269787 - 31269734
Alignment:
Q  189 cctccaagtggttaaaccttgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31269787 cctccaagtggttacaccttgagttgtggtttcctcttgttggataagcatttg 31269734  T

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Target: scaffold0525 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 2354 - 2301
Alignment:
Q  189 cctccaagtggttaaaccttgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  2354 cctccaagtgattacaccttgagttgtggtttcctcttgttggataagcatttg 2301  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 11814932 - 11814981
Alignment:
Q  193 caagtggttaaaccttgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  11814932 caagcggttaaaccttgagttgtggtttcctctggttggataagcatttg 11814981  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 5444519 - 5444557
Alignment:
Q  204 accttgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5444519 accttgagttgtggtttcctcttgttggataagcatttg 5444557  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 9906144 - 9906092
Alignment:
Q  190 ctccaagtggttaaaccttgagttgtggtttcctcttgttggataagcatttg 242  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  9906144 ctccaagtgattacaccttgagttgtggtttcctcttgttggataggcatttg 9906092  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 35267808 - 35267763
Alignment:
Q  193 caagtggttaaaccttgagttgtggtttcctcttgttggataagca 238  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||    
T  35267808 caagcggttaaaccttgagttgtggtttcttcttgttggataagca 35267763  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 8024419 - 8024478
Alignment:
Q  18 cagctccaagaattagcttctaaatcattatttgaccctgattcaactcagttttggtca 77  Q
    ||||||||  |||||||||||||||||||||||||||||| || | |||||||| |||||    
T  8024419 cagctccattaattagcttctaaatcattatttgaccctgtttaagctcagtttaggtca 8024478  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 7275454 - 7275416
Alignment:
Q  204 accttgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  7275454 accttgagttgtggtttcctcttgttggataagcctttg 7275416  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 8024521 - 8024572
Alignment:
Q  95 aaattttgaccactcatcgaagaatagagatataaatacgggcaatattaga 146  Q
    ||||||||||||||||||||| |||| || |||||||||| |||| ||||||    
T  8024521 aaattttgaccactcatcgaaaaatataggtataaatacgagcaacattaga 8024572  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 18647642 - 18647701
Alignment:
Q  18 cagctccaagaattagcttctaaatcattatttgaccctgattcaactcagttttggtca 77  Q
    ||||||||  |||||||||||||||||||||||||||||| || | |||||||| |||||    
T  18647642 cagctccattaattagcttctaaatcattatttgaccctgtttaagctcagtttaggtca 18647701  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 18647744 - 18647795
Alignment:
Q  95 aaattttgaccactcatcgaagaatagagatataaatacgggcaatattaga 146  Q
    ||||||||||||||||||||| |||| || |||||||||| |||| ||||||    
T  18647744 aaattttgaccactcatcgaaaaatataggtataaatacgagcaacattaga 18647795  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 6823337 - 6823297
Alignment:
Q  197 tggttaaaccttgagttgtggtttcctcttgttggataagc 237  Q
    ||||| ||||||||||||||||| | |||||||||||||||    
T  6823337 tggttcaaccttgagttgtggttgcttcttgttggataagc 6823297  T

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Target: scaffold0263 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 22723 - 22757
Alignment:
Q  208 tgagttgtggtttcctcttgttggataagcatttg 242  Q
    |||||||||||||||||||||||||||||||||||    
T  22723 tgagttgtggtttcctcttgttggataagcatttg 22757  T

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Target: scaffold0862 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 39 - 88
Alignment:
Q  194 aagtggttaaaccttgagttgtggtttcctcttgttgga-taagcatttg 242  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  39 aagtggttacaccttgagttgtggttttctcttgttggagtaagcatttg 88  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 10745417 - 10745452
Alignment:
Q  199 gttaaaccttgagttgtggtttcctcttgttggata 234  Q
    ||||||||||||||||| ||||||||||||||||||    
T  10745417 gttaaaccttgagttgtagtttcctcttgttggata 10745452  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 4607257 - 4607298
Alignment:
Q  197 tggttaaaccttgagttgtggtttcctcttgttggataagca 238  Q
    ||||| ||||||||||||||||| | ||||||||||||||||    
T  4607257 tggttcaaccttgagttgtggttgcttcttgttggataagca 4607298  T

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Target: scaffold1412 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 65 - 25
Alignment:
Q  197 tggttaaaccttgagttgtggtttcctcttgttggataagc 237  Q
    ||||| ||||||||||||||||| | |||||||||||||||    
T  65 tggttcaaccttgagttgtggttgcttcttgttggataagc 25  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 144963 - 144923
Alignment:
Q  197 tggttaaaccttgagttgtggtttcctcttgttggataagc 237  Q
    ||||| ||||||||||||||||| | |||||||||||||||    
T  144963 tggttcaaccttgagttgtggttgcttcttgttggataagc 144923  T

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