View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_90 (Length: 241)
Name: NF1720_high_90
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_90 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 4641670 - 4641835
Alignment:
| Q |
18 |
taagtttcttatacatacatgtttatttctttaatttgttaagtaagcctcggtttctatacagtttctacgttctacaatgaaaatgaagccttgtcag |
117 |
Q |
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| T |
4641670 |
taagtttcttatacatacatgttcatttctttaatttgttaag----cctcggtttctacacagtttctacgttctacaatgaaaatgaagccttgtcag |
4641765 |
T |
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| Q |
118 |
caatctcaagtagtcccaaatgcttccatgttgccatagtggaggtaatgaactttcattttccacgagc |
187 |
Q |
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| T |
4641766 |
caatctcaagtagtcccaaatgcttccatgttgccatagtggaggtaatgaactttcattttccacgagc |
4641835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 4641853 - 4641889
Alignment:
| Q |
205 |
gaattttgtatagcaggctaattaaaatgatgtgaat |
241 |
Q |
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| T |
4641853 |
gaattttgtctagtaggctaattaaaatgatgtgaat |
4641889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 40803892 - 40803760
Alignment:
| Q |
48 |
ttaatttgttaagtaagcctcggtttctatacagtttctacgttctacaatgaaaatgaagccttgtcagcaatctcaagtagtcccaaatgcttccatg |
147 |
Q |
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| T |
40803892 |
ttaagttgtttattaatcctcagtttctatacagtttctatattctgtgatgtgaatgaagccttgtcagcagtctcaagtagacctgaagatttccata |
40803793 |
T |
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| Q |
148 |
ttgccatagtggaggtaatgaactttcattttc |
180 |
Q |
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| T |
40803792 |
tagctatagtggaggtaatgaactttcattttc |
40803760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 52517003 - 52516925
Alignment:
| Q |
102 |
aatgaagccttgtcagcaatctcaagtagtcccaaatgcttccatgttgccatagtggaggtaatgaactttcattttc |
180 |
Q |
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|||||||||||||||||| |||||||||| || || |||||| | ||||||||||| ||||||||||||||||||| |
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| T |
52517003 |
aatgaagccttgtcagcagtctcaagtagacctgaagatttccatatagccatagtggaagtaatgaactttcattttc |
52516925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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