View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_high_92 (Length: 238)
Name: NF1720_high_92
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_high_92 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45800701 - 45800481
Alignment:
| Q |
1 |
ctgccgttaagtctccgtcagtgtcggttccgccgctgacttctgatttgagaacagtccactaactaaggccataggatgatttattaagccacgtgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45800701 |
ctgccgttaagtctccgtcagtgtcggttccgccgctgacttctgatttgagaacagtccactaactaaggccataggatgatttattaagccacgtgtc |
45800602 |
T |
|
| Q |
101 |
agtatcttaattggtattagatcactttgacgatccacaaaacccatcataggtgactgttgcacaatcgtaatccttgatacaattgatggtgggtccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
45800601 |
agtatcttaattggtattagatcactttgacgatccacaaaacccatcattggtgactgttgcacaatcgtaatccttgatacaagatacggtgggtccc |
45800502 |
T |
|
| Q |
201 |
ataagatacggtggctcctcc |
221 |
Q |
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| ||||||||||||||||||| |
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| T |
45800501 |
acaagatacggtggctcctcc |
45800481 |
T |
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