View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_10 (Length: 513)
Name: NF1720_low_10
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 287 - 497
Target Start/End: Original strand, 31796451 - 31796661
Alignment:
| Q |
287 |
tctttaaaatgaagaaaacattatggaagttaaataaatttaatttcgacaattattcttcaatatttatttcacacttcttttttcatataaagcttca |
386 |
Q |
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| T |
31796451 |
tctttaaaatgaagaaaacattatggaagttaaataaatttaatttcgacaattattcttcaatatttatttcacacttcttttttcatataaagcttca |
31796550 |
T |
|
| Q |
387 |
cgtttttgttaagatgtaaatgtgggacttgtttctgacaccatttgaaagacaaactccgatagtgaagtaaaatgaaatgagaaaaatgggaaaggct |
486 |
Q |
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| T |
31796551 |
cgtttttgttgagttgtaaatgtgggacttgtttctgacaccatttgaaagacaaactccgatagtgaaggaaaatgaaatgagaaaaatgggaaaggct |
31796650 |
T |
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| Q |
487 |
ttttaatgtcc |
497 |
Q |
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||||||||||| |
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| T |
31796651 |
ttttaatgtcc |
31796661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 31796113 - 31796314
Alignment:
| Q |
1 |
ttacatccaccccctccgaagcaaatacccagcttcatcccacaacattctaagaaaagggtataagagnnnnnnngacaaatacaagcttaaagtgttt |
100 |
Q |
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| T |
31796113 |
ttacatccacaccctccgaagcaaatacccaacttcatcccacaacattctaagaaaagggtataagagaaaaaaagacaaatacaagcttaaagtgttt |
31796212 |
T |
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| Q |
101 |
ttaattgttgcatcttataacaaagaaataaagtctatataagtatcaatttgcttgtcttacacttacgaagcattttgtgtcctagaagacttatcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
31796213 |
ttaattgttgcatcttataacaaagaaataaagtctatataagtatcaatttgcttgtcttacacttacgaagcattttgtttcctataagacttatcaa |
31796312 |
T |
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| Q |
201 |
gc |
202 |
Q |
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|| |
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| T |
31796313 |
gc |
31796314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 52733025 - 52732966
Alignment:
| Q |
82 |
atacaagcttaaagtgtttttaattgttgcatcttataacaaagaaataaagtctatata |
141 |
Q |
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|||||| |||||||||||||| |||| |||||||||||||||||||||||||| |||||| |
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| T |
52733025 |
atacaaacttaaagtgttttttattggtgcatcttataacaaagaaataaagtttatata |
52732966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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