View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_107 (Length: 221)
Name: NF1720_low_107
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_107 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 30354993 - 30354781
Alignment:
| Q |
3 |
catacatccgcaaggatcccataaccgttcataaaacaaataatggagcctatccaaccgattcaaaccccacctccacgacacnnnnnnnnaatcgcat |
102 |
Q |
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| T |
30354993 |
catacatccgcaaggatcccatgaccgttcataaaacaaacaatggagcctatccaaccgattcaaaccccacctccatgaca-ttttttttaatcgcat |
30354895 |
T |
|
| Q |
103 |
ccactatatccaaaggttttttgatcctatttgaaaataaattatccctcatttcttccgaaataagacataccccaatgaaccagacaaaccaaaatcc |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30354894 |
ccactatatccaaaggttctttgatcctatttgaaaataaattatccctcatttcttccgaaataagacataccccaatgaaccagacaaacgaaaatcc |
30354795 |
T |
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| Q |
203 |
cttcctttgcttct |
216 |
Q |
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||||||||| |||| |
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| T |
30354794 |
cttcctttgtttct |
30354781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 30352280 - 30352226
Alignment:
| Q |
30 |
ttcataaaacaaataatggagcctatccaaccgattcaaaccccacctccacgac |
84 |
Q |
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||||||||||||| ||||| || ||| ||||||| ||||||||||||| |||||| |
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| T |
30352280 |
ttcataaaacaaaaaatggggcatattcaaccgactcaaaccccaccttcacgac |
30352226 |
T |
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