View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_11 (Length: 505)
Name: NF1720_low_11
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 1041993 - 1041502
Alignment:
| Q |
1 |
gttggcacaataaattatatattttttcttaactttatcatacaaaaaggaagcatgtaggaaagaactacaacaaacataggttaggtcaattcaaaac |
100 |
Q |
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| T |
1041993 |
gttggcacaataaattatatattttttcttaactttatcattcaaaaaggaagcatgtaggaaagaactacaacaaacataggttaggtcaattcaaaac |
1041894 |
T |
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| Q |
101 |
aaagaatgaatctcatataatagtcatatttaatgtaccaagaagagctacatttgttaataagaagcatatatatacaaaccttgacatgttcatgaaa |
200 |
Q |
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| T |
1041893 |
atagaatgaatctcatatcatagtcatatttaatgtaccaagaagggctacatttgttaataagaagcatatatatacaaaccttgacatgttcatgaaa |
1041794 |
T |
|
| Q |
201 |
tcaactaaaatttgaacacaactaattcttacattgaagctatatatatagttgttttcttataagtctttgaatataaa--cttattcgttgttctcat |
298 |
Q |
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| T |
1041793 |
tcaagtaaaatttgaacacaactaattcttacattgaagctatatatatatttgttttcttataagtctttgaatataaactctcattcgttgttctcat |
1041694 |
T |
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| Q |
299 |
catcaaatcaaagtttctagcaaattacaaatattcttgaagtgagaaaattatgggtcttattggaaaaagtttcacttccaaattgaaaaatttaaca |
398 |
Q |
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| T |
1041693 |
catcaaatcaaagtttctagcaaatttcaaatatttttgaagtgagaaaattatgggtcttattggaaaaagtttcacttccaaattgaaaaatttaaca |
1041594 |
T |
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| Q |
399 |
tcacttgcaatttctaggattgctatcttgaagaatcatcgtaaagctagagattcttatgcttactttgatgtttctcaactcttgaaact |
490 |
Q |
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| T |
1041593 |
tcacttgcaatttctaggattgctatcttgaagaatcatcgtaaagctagagattcttatgcttattttgatgtttctcaactcttgaaact |
1041502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 1046406 - 1046027
Alignment:
| Q |
1 |
gttggcacaataaattatatattttttcttaactttatcatacaaaaaggaagcatgtaggaaagaactacaacaaacataggttaggtcaattcaaaac |
100 |
Q |
| |
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|||||||||||| ||||||||||||| ||| | ||||| |||||||| |||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
1046406 |
gttggcacaatatattatatattttt-cttcagtttatgatacaaaatggaagcatgtaggaaataactaca-caagcataggttaggtcaattcaaaac |
1046309 |
T |
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| Q |
101 |
aaagaatgaatctcatataatagtcatattta-at------gtacc------aagaagagctac----atttgttaataagaagcatatatatacaaacc |
183 |
Q |
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| T |
1046308 |
aaagaatgaatctcatatcatagtcatatttatataatatggtaacaagaataagaagggttacatttatttatttataagaagcatatatatacaaacc |
1046209 |
T |
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| Q |
184 |
ttgacatgttcatgaaatcaactaaaatttgaacacaactaattcttacattgaagc----------tatatatatagttgttttcttata--agtcttt |
271 |
Q |
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| T |
1046208 |
ttgacatgttcataaaatcaagtaaaatttgaacacaactaattcttacattgaagctatatatatatatatatatagttgttttcttataagagtcttt |
1046109 |
T |
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| Q |
272 |
gaatataaacttattcgttgttctcatcatcaaatcaaagtttctagcaaattacaaatatt-----cttgaagtgagaaaatta |
351 |
Q |
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| T |
1046108 |
gaacataaactcattcgttgttctc-tcatc--atcaaagtttctagcaaattttaaatattcataacttgaagtgagaaaatta |
1046027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 45 - 439
Target Start/End: Original strand, 1045631 - 1046015
Alignment:
| Q |
45 |
aaaaggaagcatgtaggaaagaactacaacaaacataggttaggtcaattcaaaacaaagaatgaatctcatataatagtcatatttaatgtaccaagaa |
144 |
Q |
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|||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||| |||||||| |||| | ||| |
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| T |
1045631 |
aaaaggaagcatgtaggaaagaaccacaa---------gttaggccaattcaaaaca--gaatgaatctcatatcatagtcatgtttatag------gaa |
1045713 |
T |
|
| Q |
145 |
gagctacatttgtta-ataagaagcatatatatacaaaccttgacatgttcatgaaatcaactaaaatttgaacacaactaattcttacattgaagctat |
243 |
Q |
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| T |
1045714 |
cggctacatttattatattagtagcatatatttacaaacattgacatgttcataaaatcaagtaaaatctgaacaaaaataattctttaattgaagctat |
1045813 |
T |
|
| Q |
244 |
atatatagttgttttcttataag--tctttgaatataaacttattcgttgttctcatcatcaaatcaaagtttctagcaaattacaaatattc------- |
334 |
Q |
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||| |||||||||| ||||| ||||||| ||||||| |||||||||||| |||| | ||||||||| |||||||||| |||||||| |
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| T |
1045814 |
ata----gttgttttctaataagagtctttgatcataaactctttcgttgttctc-tcatta--tcaaagtttatagcaaattaaaaatattcataattt |
1045906 |
T |
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| Q |
335 |
------ttgaagtgagaaaattatgggtcttattggaaaaagtttcacttccaaattgaaaaatttaacatcacttgcaatttctaggattgctatcttg |
428 |
Q |
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| T |
1045907 |
aaagttttaaagtgagaaaa--atgggtcttattggaaaaagcttcacttccaaattgaaaaacttaacatcacttgcaatttctagcattgctatcttg |
1046004 |
T |
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