View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_110 (Length: 220)
Name: NF1720_low_110
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 46873281 - 46873096
Alignment:
| Q |
19 |
attgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtg |
118 |
Q |
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| T |
46873281 |
attgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtg |
46873182 |
T |
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| Q |
119 |
cccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacag |
204 |
Q |
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| T |
46873181 |
cccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacag |
46873096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 46890693 - 46890593
Alignment:
| Q |
19 |
attgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtg |
118 |
Q |
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| T |
46890693 |
attgttaccttcttcaccatgagcaaagagacagttcattccaaaggaacaatatcctgtatgcttccaattgcgacacagcttagtcttccgataagtg |
46890594 |
T |
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| Q |
119 |
c |
119 |
Q |
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| T |
46890593 |
c |
46890593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 46890502 - 46890418
Alignment:
| Q |
120 |
ccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacag |
204 |
Q |
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||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
46890502 |
ccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattgcaataattcttgcacag |
46890418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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