View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_13 (Length: 485)
Name: NF1720_low_13
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 27791642 - 27791900
Alignment:
| Q |
16 |
caatacaaacttcaaagcttagctacggcacaggaccagcaaaaaacgtgcaaatccaaagcatgaaaaagcttttgacatgatcagttggacaagtgca |
115 |
Q |
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| T |
27791642 |
caatacaaacttcaaagcttagctacggcacaggaccagcaaaaaacgtgcaaatccaaagcatgaaaaagcttttgacatgatcagttggacaagtgca |
27791741 |
T |
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| Q |
116 |
gaatcagcacctgaaatgtggcaactcacctaaaagaaaccaaacttgttttagaaccccacacacattgttaattacacatcagattcgctgcagtcac |
215 |
Q |
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| T |
27791742 |
gaatcagcacctgaaatgtggcaactcacctaaaagaaaccaaacttgttttagaaccc--cacacattgttaattacacatcagattcgctgcagtcac |
27791839 |
T |
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| Q |
216 |
aaatttgctgcattcatgcattcagcacataagcccgatttagatccaaaaattgaggatg |
276 |
Q |
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| T |
27791840 |
aaatttgccacattcatgcattcagcacataagcctgatctagatccaaaaattgaggatg |
27791900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 307 - 479
Target Start/End: Original strand, 27791876 - 27792048
Alignment:
| Q |
307 |
gatctagatccaaaaattgaggatgtgccatatgcatgaatgcggcaaatttgggactgcagggaatcctgggcatgacagtaaagttaagctttacatc |
406 |
Q |
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| T |
27791876 |
gatctagatccaaaaattgaggatgtgccatatgcatgaatacggcaaatttgtgactgcagggaatcctgggcatgacagtaaagttaagctttacatc |
27791975 |
T |
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| Q |
407 |
tgtgacagaagagttccactagatgtgaaagcaaggctaaattagttagtacatccttgtagtttcatctcac |
479 |
Q |
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| T |
27791976 |
tggggcagaagagttccactagatgtgaaagcaaggataaattagttagtacatccttgtagtttcatttcac |
27792048 |
T |
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