View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_14 (Length: 485)
Name: NF1720_low_14
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 18499485 - 18499121
Alignment:
| Q |
11 |
atcatcatgttccttaccattcttaaaatccagctgtttgaaacatccaggatctccttcctttcacaggacttgaaattcataaacaacacaactactt |
110 |
Q |
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| T |
18499485 |
atcatcatgttcctcaccattcttaaaatccagctgtttgaaacatccaggatctccttcctttcacaggacttgaaattcataaacaacacaactgctt |
18499386 |
T |
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| Q |
111 |
ttgcttagagaaataaattcttcatctgatggcttctcttctagtttcatgatctcttgaagaaatttc------------atttgttcgaccannnnnn |
198 |
Q |
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| T |
18499385 |
ttgcttagagaaataaattcttcatctgatggcttctcttctagttacatgatctcttgaagaaatttcatgcaacaaggaatttgttcgaccatttctt |
18499286 |
T |
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| Q |
199 |
ngatgggcatgttaactttaaacgtttctaacactttgatgagctcttgaaaattttctttttcttaattcttaccattttcaacttccacttcaagagt |
298 |
Q |
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| T |
18499285 |
tgatgggcatgttaactttaaacttttctaacactttgatgagctcttgaaaattttctttttcttaattctcaccattttcaacttccacttcaagagt |
18499186 |
T |
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| Q |
299 |
cttgcatttttcaatgttatgttatgtctattcctcaacaactgtttctgatacctcaacattag |
363 |
Q |
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| T |
18499185 |
cttgcatttttcaatgttatgttatgtctattcctcaacaactgtttctgatacctcaacattag |
18499121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 361
Target Start/End: Complemental strand, 14419604 - 14419456
Alignment:
| Q |
213 |
actttaaacgtttctaacactttgatgagctcttgaaaattttctttttcttaattcttaccattttcaacttccacttcaagagtcttgcatttttcaa |
312 |
Q |
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| T |
14419604 |
actttaaacttttctaaagctttgatgagctcttaaaaattttcattttcttgatgctcgccaacttctattcccacgtcaagagtctttccttctttaa |
14419505 |
T |
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| Q |
313 |
tgttatgttatgtctattcctcaacaactgtttctgatacctcaacatt |
361 |
Q |
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| T |
14419504 |
agtcatgttgtgtatcatcctcaactattgtttctgatacttcaacatt |
14419456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 24839589 - 24839527
Alignment:
| Q |
201 |
atgggcatgttaactttaaacgtttctaacactttgatgagctcttgaaaattttctttttct |
263 |
Q |
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| T |
24839589 |
atgggtatattagctttatacttttctaaagctttgatgagatcttgaaaattttctttttct |
24839527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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