View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_15 (Length: 474)
Name: NF1720_low_15
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 463
Target Start/End: Original strand, 38946365 - 38946811
Alignment:
| Q |
17 |
tataattcccttaaaaaataaatcaatatatagtcgtaaggaaatgctcgtggtagctggggacgccaaaattttgagcttgccaccggtcacctccacc |
116 |
Q |
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| T |
38946365 |
tataattcccttaaaaaataaatcaatctatagtcataaggatatgctcgtggtagctggggacgccaaaattttgagcttgccaccggtcccctccatc |
38946464 |
T |
|
| Q |
117 |
gaaactaagggtgttcgtttgtagcagtatttgggtcactcagttgtttagattaataattgaatgcatttattcaagatcaagtgagaaatacaagaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38946465 |
gaaactaagggtgttcgtttgtagcagtatttgggtcactcagttgtttagattaataattgaatgcatttattcaagatcaagtgagaaatacaagaat |
38946564 |
T |
|
| Q |
217 |
catnnnnnnnnnnnnnnnnntatagaagagagaaatacaagttgtggatgatagaaacaa-nnnnnnnnaagcatggatgataaaaacaattgagaatag |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
38946565 |
tataaaataaaaaattaaaatatagaagagagaaatacaagttgtggatgataaaaacaatttttttttaagcatggatgataaaaacaattgagaatag |
38946664 |
T |
|
| Q |
316 |
ccgtaattgttgtcttcattgtgttcttgttgaatgacaaatgttagtaattaattgttatattatttcttaatctatttagatttgtttgataagattg |
415 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38946665 |
-cgtaattgttgtcttcattgtgtttttgttgaatgacaaatgttagtaattaattgttatattatttcttaatctatttagatttgtttgataagattg |
38946763 |
T |
|
| Q |
416 |
atttgatgtactggagtgtatttcttttacggtttcatttcgattctt |
463 |
Q |
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| T |
38946764 |
gtttgatgtactggagtgtatttcttttaaggttttatttcgattctt |
38946811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 27112403 - 27112435
Alignment:
| Q |
348 |
aatgacaaatgttagtaattaattgttatatta |
380 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
27112403 |
aatgacaaatgttagtaattaattgttagatta |
27112435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 51421450 - 51421482
Alignment:
| Q |
348 |
aatgacaaatgttagtaattaattgttatatta |
380 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
51421450 |
aatgacaactgttagtaattaattgttatatta |
51421482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 4912090 - 4912123
Alignment:
| Q |
341 |
cttgttgaatgacaaatgttagtaattaattgtt |
374 |
Q |
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| T |
4912090 |
cttgttgaatgataaatgttagtaattaattgtt |
4912123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 2477319 - 2477287
Alignment:
| Q |
348 |
aatgacaaatgttagtaattaattgttatatta |
380 |
Q |
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|||||||||||||||||||||||||||| |||| |
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|
| T |
2477319 |
aatgacaaatgttagtaattaattgttagatta |
2477287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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