View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_16 (Length: 467)

Name: NF1720_low_16
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_16
NF1720_low_16
[»] chr1 (6 HSPs)
chr1 (18-447)||(7432995-7433424)
chr1 (221-454)||(34644540-34644775)
chr1 (290-364)||(28041116-28041190)
chr1 (233-376)||(2764465-2764609)
chr1 (296-369)||(25375817-25375890)
chr1 (386-454)||(37932116-37932185)
[»] chr5 (6 HSPs)
chr5 (234-369)||(37873622-37873758)
chr5 (221-360)||(25663025-25663165)
chr5 (297-369)||(15292010-15292082)
chr5 (300-369)||(32230491-32230560)
chr5 (290-363)||(14423722-14423795)
chr5 (290-454)||(33691953-33692118)
[»] chr8 (5 HSPs)
chr8 (216-454)||(39434636-39434876)
chr8 (238-454)||(24125019-24125237)
chr8 (234-454)||(25021712-25021934)
chr8 (234-359)||(38815281-38815407)
chr8 (298-454)||(500279-500436)
[»] chr4 (7 HSPs)
chr4 (233-428)||(55933387-55933581)
chr4 (238-363)||(34107684-34107812)
chr4 (233-363)||(53619572-53619703)
chr4 (291-361)||(600684-600754)
chr4 (290-367)||(41440068-41440145)
chr4 (233-280)||(4419249-4419297)
chr4 (237-308)||(38535614-38535686)
[»] chr3 (5 HSPs)
chr3 (298-454)||(49018015-49018172)
chr3 (238-361)||(52741504-52741628)
chr3 (297-454)||(13582560-13582718)
chr3 (234-321)||(38146043-38146131)
chr3 (290-369)||(44198811-44198890)
[»] chr7 (7 HSPs)
chr7 (291-363)||(22198031-22198103)
chr7 (291-363)||(22239718-22239790)
chr7 (233-363)||(28517277-28517408)
chr7 (234-346)||(9281138-9281251)
chr7 (234-346)||(9292109-9292222)
chr7 (287-363)||(982990-983066)
chr7 (238-369)||(21326822-21326954)
[»] chr6 (4 HSPs)
chr6 (290-369)||(17249289-17249368)
chr6 (238-454)||(4206494-4206712)
chr6 (343-454)||(12401428-12401540)
chr6 (242-369)||(34554261-34554389)
[»] chr2 (4 HSPs)
chr2 (297-454)||(23484836-23484994)
chr2 (290-363)||(28225044-28225117)
chr2 (333-428)||(7760771-7760866)
chr2 (234-363)||(5532407-5532536)
[»] scaffold0031 (1 HSPs)
scaffold0031 (290-369)||(49455-49534)
[»] scaffold0490 (1 HSPs)
scaffold0490 (238-369)||(6325-6457)


Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 7432995 - 7433424
Alignment:
18 caaggtagcacatatactttacgtacccaacgtcttttcttaccttttccctttctttcttcaatacaaagaaaattacaaaatatatgtgaagcttttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
7432995 caaggtagcacatatactttacgtacccaacgtcttttcttaccttttccctttctttcttcaatacaaagaaaatgacaaaatatatgtgaagcttttt 7433094  T
118 aatttgattaattgcactccctctattttaactcgacttttattgataaagaattctctttttcatatgaacataatatctatgcacataggagatatat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7433095 aatttgattaattgcactccctctattttaactcgacttttattgataaagaattctctttttcatatgaacataatatctatgcacataggagatatat 7433194  T
218 tagattgatatggacaaccctttgaactttatgtagaagtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgtt 317  Q
    ||||||||||||||  |||| || ||||||| |||||| |||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||    
7433195 tagattgatatggattacccgttcaactttacgtagaaatcaacaacctctggtgctatgaagttaagtgtgtcaaatgcaaatggtataaaaatacgtt 7433294  T
318 gattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaag 417  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||    
7433295 gattttatgaacacattttctcatatttgatcactttgcttgacgcgactttgaagacttcctgtcccactgtaaaagccttgatccataatcgcacaag 7433394  T
418 tggtgaaacccaatcaagcgtacacatgca 447  Q
    ||||||||||||||||||||||||||||||    
7433395 tggtgaaacccaatcaagcgtacacatgca 7433424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 454
Target Start/End: Original strand, 34644540 - 34644775
Alignment:
221 attgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttga 319  Q
    ||||||||| | ||||||||| ||| |||||||||| |||||||| |||| ||||| ||||   |  || |||||  |||||||||||||| || || |     
34644540 attgatatgcataaccctttggactctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgtagg 34644639  T
320 ttttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtg 419  Q
    || |  ||||||  |||||||| ||||| ||||||||||||||| ||||| |||  | | ||| | || |||||||||  || || ||| | ||||||||    
34644640 ttgtcagaacacgctttctcatgtttggccactttgtttgacgcaacttttagggttgcttgtcctaccgtaaaagccccgacccctaaacccacaagtg 34644739  T
420 gtgaaa-cccaatcaagcgtacacatgcatgttttc 454  Q
    |||||| |||| |||||   ||||||||||||||||    
34644740 gtgaaaccccagtcaagtccacacatgcatgttttc 34644775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 28041190 - 28041116
Alignment:
290 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcg 364  Q
    ||||| |||||||||||||||||  ||||||| |  ||||||| |||||||| ||||| ||||||||||||||||    
28041190 tcaaaagcaaatggtataaaaacctgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcg 28041116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 376
Target Start/End: Original strand, 2764465 - 2764609
Alignment:
233 aaccctttgaactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 331  Q
    ||||||||| ||||||||||||| ||||||||| |||| ||||| |||| | |  || ||||| | |||||| |||||| || ||||||| |  ||||||    
2764465 aaccctttggactttatgtagaaggtcaacaacctctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtcggaacac 2764564  T
332 attttctcatatttggtcactttgtttgacgcgactttgaggact 376  Q
     ||||||||| ||||  |||||||| |||| | ||||| ||||||    
2764565 gttttctcatgtttgaccactttgtctgacacaacttttaggact 2764609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 25375890 - 25375817
Alignment:
296 gcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 369  Q
    |||||||||||||||||| ||||||  || |||||  |||| |||| ||||||||||||| ||||||| |||||    
25375890 gcaaatggtataaaaacatgttgatggtaagaacatgttttgtcatgtttggtcactttgcttgacgcaacttt 25375817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 37932185 - 37932116
Alignment:
386 actgtaaaagccttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc 454  Q
    |||||||||||||||  || ||||| |||||||||||||||| ||||||||   || |||||||||||||    
37932185 actgtaaaagccttggcccctaatcccacaagtggtgaaacctcaatcaagtccacgcatgcatgttttc 37932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 369
Target Start/End: Complemental strand, 37873758 - 37873622
Alignment:
234 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 332  Q
    |||||||||||| |||||||||| |||||||| |||||||||| ||||  ||  || ||||| |||||||||||||||||| ||||||| |  ||||||     
37873758 accctttgaactctatgtagaaggtcaacaacctctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacg 37873659  T
333 ttttctcatatttggtcactttgtttgacgcgacttt 369  Q
     |||||||| ||||| ||||||| ||||||| |||||    
37873658 ctttctcatgtttggccactttgcttgacgcaacttt 37873622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 221 - 360
Target Start/End: Complemental strand, 25663165 - 25663025
Alignment:
221 attgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttga 319  Q
    ||||||||| | ||||||||| ||| |||||||||| |||||||| |||| ||||| |||| | |  || ||||| |||||||||||||||||| |||||    
25663165 attgatatgcataaccctttggactctatgtagaagatcaacaacttctgatgctaggaagctgaaagtgtcaaaagcaaatggtataaaaacatgttga 25663066  T
320 ttttatgaacacattttctcatatttggtcactttgtttga 360  Q
    || |  ||||||  |||||||| ||||| ||||||||||||    
25663065 ttatcagaacacgctttctcatgtttggccactttgtttga 25663025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 15292082 - 15292010
Alignment:
297 caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 369  Q
    ||||| ||||||||||| ||||||| |  |||||| ||||||||| ||||| ||||||||||||||| |||||    
15292082 caaattgtataaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgtttgacgccacttt 15292010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 32230560 - 32230491
Alignment:
300 atggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 369  Q
    ||||||||||| |  ||||||| |  |||||||||||||||| ||||||||||||| ||||||| |||||    
32230560 atggtataaaagcttgttgattgtcagaacacattttctcatgtttggtcactttgcttgacgcaacttt 32230491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 14423722 - 14423795
Alignment:
290 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 363  Q
    ||||| ||||||||||||||| || ||||||| |  ||||||  |||||||| || |||||||||| |||||||    
14423722 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgttcggtcactttgcttgacgc 14423795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 454
Target Start/End: Complemental strand, 33692118 - 33691953
Alignment:
290 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactg 389  Q
    ||||| |||||||||| |||| || ||||||| |   ||||| |||| |||| ||||| ||||||| |||||||  |||| ||| || | ||| | || |    
33692118 tcaaaagcaaatggtacaaaagcatgttgattgtcataacacgttttgtcatgtttggccactttgcttgacgcagcttttaggcctgcctgtcctaccg 33692019  T
390 taaaagccttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc 454  Q
    ||||||||  || || ||| | |||||||||||||||| || |||||   ||||||||||||||||    
33692018 taaaagccccgacccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttttc 33691953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 216 - 454
Target Start/End: Original strand, 39434636 - 39434876
Alignment:
216 attagattgatatggacaaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacac 314  Q
    |||| ||||||||| | ||||||||| ||| |||||||||| ||||   | |||| ||||| ||||| ||  || |||||  |||||||||||||| ||     
39434636 attacattgatatgcataaccctttggactctatgtagaagatcaaatgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcat 39434735  T
315 gttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcac 414  Q
    ||||||| |  ||||||  |||||||| ||||| ||||||| ||||||| ||||| ||  |||| ||| | |||||||||||||  | || ||| | |||    
39434736 gttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagcttcctgtcctactgtaaaagcctccacccctaaacccac 39434835  T
415 aagtggtgaaa-cccaatcaagcgtacacatgcatgttttc 454  Q
    ||||||||||| |||| |||||   ||||||||||||||||    
39434836 aagtggtgaaaccccagtcaagtacacacatgcatgttttc 39434876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 454
Target Start/End: Original strand, 24125019 - 24125237
Alignment:
238 tttgaactttatgtagaagtc-aacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 336  Q
    ||||||||||||||||||| | |||||| |||||||||| ||| | ||   | ||||| ||||||||||||||| || ||||||| |  || |||  |||    
24125019 tttgaactttatgtagaaggccaacaacctctggtgctaggaaatcaaaattgtcaaaagcaaatggtataaaagcatgttgattgtcagagcacgcttt 24125118  T
337 ctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaag 435  Q
    ||||| ||||| || |||| |||| ||  |||| ||| || | ||| |||| ||||||| |  ||  ||||||| |||||||||||||| |||| |||||    
24125119 ctcatgtttggccattttgcttgatgcagcttttagggctgcttgtcccaccgtaaaaggcacgacgcataatcccacaagtggtgaaaccccagtcaag 24125218  T
436 cgtacacatgcatgttttc 454  Q
      |||||||||||||||||    
24125219 tctacacatgcatgttttc 24125237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 454
Target Start/End: Complemental strand, 25021934 - 25021712
Alignment:
234 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 332  Q
    |||||||||||||| ||| || | |||||||| |||||||||| ||||  ||   | ||||| | |||||||||||||||| ||||||| |  |||||||    
25021934 accctttgaactttgtgtggatggtcaacaacctctggtgctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgtgagaacaca 25021835  T
333 ttttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaac-ccaat 431  Q
     ||||||||||||   ||||||| ||||| | ||||| ||| ||  ||||   ||||||||| | | || || ||||| ||||||||||||||| ||  |    
25021834 ctttctcatatttcaccactttgcttgacacaacttttagggctgtatgtcatactgtaaaaacatcgacccctaatcccacaagtggtgaaactccggt 25021735  T
432 caagcgtacacatgcatgttttc 454  Q
    ||||   ||||||||||||||||    
25021734 caagtccacacatgcatgttttc 25021712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 359
Target Start/End: Original strand, 38815281 - 38815407
Alignment:
234 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 332  Q
    |||||||||||| |||||||||| |||||| | |||||||||| ||||   |  || ||||| ||||||||||||||| || ||||||| |  ||||||     
38815281 accctttgaactctatgtagaaggtcaacaccctctggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacg 38815380  T
333 ttttctcatatttggtcactttgtttg 359  Q
     |||||||| ||||| |||||||||||    
38815381 ctttctcatgtttggccactttgtttg 38815407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 454
Target Start/End: Original strand, 500279 - 500436
Alignment:
298 aaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagcc 397  Q
    ||||||||||||| || ||||||| |  |||||| ||||||||| ||||| ||||||| ||||||| ||||| ||| ||    || | || ||||||| |    
500279 aaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttttagggctgtcggtcctaccgtaaaaggc 500378  T
398 ttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc 454  Q
      ||  | ||||| |||||||||||||||| || |||||  |||||||||||||||||    
500379 ccgacacctaatcccacaagtggtgaaacctcactcaagtctacacatgcatgttttc 500436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 428
Target Start/End: Complemental strand, 55933581 - 55933387
Alignment:
233 aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 331  Q
    ||||||||| ||| |||||||||| ||||||||  ||| ||||| |||||  |  || ||||| ||||||||||||||| || ||||||| |  |||||     
55933581 aaccctttggactctatgtagaaggtcaacaac--ctgatgctaggaagtcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgttagaacaa 55933484  T
332 attttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaaccc 428  Q
    | |||||||| ||||| ||||||||||||||| ||||| ||| ||   ||| | || ||||||||| ||| || ||| | |||||| ||||||||||    
55933483 actttctcatgtttggccactttgtttgacgcaacttttagggctgactgtcctaccgtaaaagccctgacccttaaacccacaaggggtgaaaccc 55933387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 363
Target Start/End: Complemental strand, 34107812 - 34107684
Alignment:
238 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca--tt 334  Q
    |||||||| |||||||||| |||||| | |||||||||| ||| |  |  || |||||  ||||||||||||||||| ||||||| | ||||||||  ||    
34107812 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaaacaaatggtataaaaacatgttgattatctgaacacacgtt 34107713  T
335 ttctcatatttggtcactttgtttgacgc 363  Q
    ||||||| ||||| ||||| |||||||||    
34107712 ttctcatgtttggccacttcgtttgacgc 34107684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 363
Target Start/End: Original strand, 53619572 - 53619703
Alignment:
233 aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 331  Q
    ||||||||  ||| |||||||||| |||||  | |||| ||||| ||||| ||  || |||||  |||||||||||||| || ||||||| |  ||||||    
53619572 aaccctttagactctatgtagaaggtcaactgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaacac 53619671  T
332 attttctcatatttggtcactttgtttgacgc 363  Q
     ||||||||| ||||| ||||||| |||||||    
53619672 gttttctcatgtttggccactttgcttgacgc 53619703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 600754 - 600684
Alignment:
291 caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgac 361  Q
    |||| ||||||||||||||| || ||| ||| |  |||||| ||||||||| ||||||||||||| |||||    
600754 caaaagcaaatggtataaaagcatgttaattgttagaacacgttttctcatgtttggtcactttgcttgac 600684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 367
Target Start/End: Complemental strand, 41440145 - 41440068
Alignment:
290 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgact 367  Q
    ||||||| |||| ||||||||||||||||| | |  ||||||||||||| || ||||   ||||||||||| ||||||    
41440145 tcaaatgtaaatagtataaaaacacgttgaatgttagaacacattttcttatgtttgactactttgtttgaagcgact 41440068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 4419249 - 4419297
Alignment:
233 aaccctttgaactttatgtagaa-gtcaacaacatctggtgctacgaag 280  Q
    ||||||||||||| ||||||||| ||||||||| |||| ||||||||||    
4419249 aaccctttgaactctatgtagaaggtcaacaacctctgatgctacgaag 4419297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 38535686 - 38535614
Alignment:
237 ctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataa 308  Q
    ||||||||| |||||||| | | |||||| |||||||||| ||||| ||  || |||||||||||||||||||    
38535686 ctttgaactctatgtagagggtgaacaacctctggtgctaggaagtcaaaagtgtcaaatgcaaatggtataa 38535614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 454
Target Start/End: Original strand, 49018015 - 49018172
Alignment:
298 aaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagcc 397  Q
    |||||||||||||||| ||||||| |  ||||||| |||||||| |||||||||||||||| |||  ||||| |||  | | ||| | || ||||||| |    
49018015 aaatggtataaaaacatgttgattgttagaacacactttctcatgtttggtcactttgttttacgtaactttcagggttgcttgtcctaccgtaaaaggc 49018114  T
398 ttgatccataatcgcacaagtggtgaaac-ccaatcaagcgtacacatgcatgttttc 454  Q
    | ||  | ||||  ||||||||||||||| ||| |||||  |||||||||||||||||    
49018115 tcgacacctaattccacaagtggtgaaactccagtcaagtttacacatgcatgttttc 49018172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 361
Target Start/End: Complemental strand, 52741628 - 52741504
Alignment:
238 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 336  Q
    |||||||| |||||||||| |||||||| |||||||||| |||   ||  || ||||| ||||||||||||||| || ||||||| |  ||||||  |||    
52741628 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 52741529  T
337 ctcatatttggtcactttgtttgac 361  Q
    ||||| |||||||| ||||||||||    
52741528 ctcatgtttggtcaatttgtttgac 52741504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 454
Target Start/End: Original strand, 13582560 - 13582718
Alignment:
297 caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagc 396  Q
    ||||||||||||||||||||||||| |  ||||||| ||||| || |||| |||||||| |||||||  |||| ||| || | ||| | || |||||||     
13582560 caaatggtataaaaacacgttgattgtcagaacacactttcttatgtttgatcactttgattgacgcagcttttagggctgcttgtcctacggtaaaagg 13582659  T
397 cttgatccataatcgcacaagtggtgaaacc-caatcaagcgtacacatgcatgttttc 454  Q
    | |||  | ||||| |||||||| ||||||| |  |||||  |||||||||||||||||    
13582660 cctgacacctaatcccacaagtgttgaaacctcggtcaagtctacacatgcatgttttc 13582718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 38146043 - 38146131
Alignment:
234 accctttgaactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgatt 321  Q
    |||||||||||| || |||||| || |||||| |||||||||| ||||| ||  || ||||||| |||||||||||||||| |||||||    
38146043 accctttgaactctaagtagaatgtaaacaacctctggtgctaggaagtcaaaagtgtcaaatgtaaatggtataaaaacatgttgatt 38146131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 44198811 - 44198890
Alignment:
290 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 369  Q
    ||||| ||||||||||||||| || ||||||| |  ||||||  |||||||| ||||| ||||||| ||||||| |||||    
44198811 tcaaaagcaaatggtataaaagcatgttgattctcagaacacgctttctcatgtttggccactttgcttgacgcaacttt 44198890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 22198031 - 22198103
Alignment:
291 caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 363  Q
    |||| |||||||||||||||||| ||||||| |  ||||||| |||||||| ||||||||||||| |||||||    
22198031 caaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc 22198103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 22239790 - 22239718
Alignment:
291 caaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 363  Q
    |||| |||||||||||||||||| ||||||| |  ||||||| |||||||| ||||||||||||| |||||||    
22239790 caaaagcaaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc 22239718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 363
Target Start/End: Complemental strand, 28517408 - 28517277
Alignment:
233 aaccctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacac 331  Q
    ||||||||| ||| |||||||||| |||||    |||| ||||| ||||| ||  || ||||| |||||||||||||||||| ||||||| | | |||||    
28517408 aaccctttggactctatgtagaaggtcaactgtctctgatgctaggaagtcaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtctaaacac 28517309  T
332 attttctcatatttggtcactttgtttgacgc 363  Q
      |||||||| ||||| ||||||| |||||||    
28517308 gctttctcatgtttggccactttgcttgacgc 28517277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 9281251 - 9281138
Alignment:
234 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 332  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||  ||   | |||||| ||||| |||||||| || ||||||| |  ||||||     
9281251 accctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacg 9281152  T
333 ttttctcatatttg 346  Q
     |||||||| ||||    
9281151 ctttctcatgtttg 9281138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 9292222 - 9292109
Alignment:
234 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 332  Q
    |||||||||||| |||||||||| ||||||||||||||||||| ||||  ||   | |||||| ||||| |||||||| || ||||||| |  ||||||     
9292222 accctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacg 9292123  T
333 ttttctcatatttg 346  Q
     |||||||| ||||    
9292122 ctttctcatgtttg 9292109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 982990 - 983066
Alignment:
287 gtatcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 363  Q
    |||||||| ||||||||||||||| || ||||||| |  ||||||  |||||||| ||||| ||||||| |||||||    
982990 gtatcaaaagcaaatggtataaaagcatgttgattgtcagaacacgatttctcatgtttggccactttgcttgacgc 983066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 369
Target Start/End: Complemental strand, 21326954 - 21326822
Alignment:
238 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 336  Q
    |||||||| |||||| ||| |||||| | |||||||||| ||| |  |  || ||||| ||||||||||||||| || ||||||| |  ||||||  |||    
21326954 tttgaactctatgtaaaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 21326855  T
337 ctcatatttggtcactttgtttgacgcgacttt 369  Q
    ||||| ||||| ||||||| |||||||| ||||    
21326854 ctcatgtttggccactttgcttgacgcggcttt 21326822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 369
Target Start/End: Complemental strand, 17249368 - 17249289
Alignment:
290 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 369  Q
    ||||| ||||||||||||||| || ||||||| |  ||||||| |||||||| ||||| ||||||||||||||| |||||    
17249368 tcaaaagcaaatggtataaaagcatgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcaacttt 17249289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 238 - 454
Target Start/End: Complemental strand, 4206712 - 4206494
Alignment:
238 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 336  Q
    |||||||| |||||||||| |||||||| |||||||||| |||    |  || ||||| ||||||| ||||||| || ||| ||| |  ||||||  |||    
4206712 tttgaactctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtcagaacacgcttt 4206613  T
337 ctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaag 435  Q
    ||||| ||| | ||||||| ||||||| ||||| | | || ||||| | || |||||||   |||| | ||||| |||||||||||||| |||| |||||    
4206612 ctcatgtttagccactttgcttgacgccacttttaaggctgcatgtcctaccgtaaaaggtctgatgcctaatcccacaagtggtgaaaccccagtcaag 4206513  T
436 cgtacacatgcatgttttc 454  Q
      |||||||||||||||||    
4206512 tctacacatgcatgttttc 4206494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 454
Target Start/End: Original strand, 12401428 - 12401540
Alignment:
343 tttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaa-cccaatcaagcgtaca 441  Q
    ||||| ||||||||||||||| ||||| ||  || | ||| | ||  |||||||| ||| |||||||| || ||||||||||| ||||||||||  ||||    
12401428 tttggccactttgtttgacgcaacttttagtgctgcttgtcctaccataaaagccctgaaccataatcccataagtggtgaaaccccaatcaagtctaca 12401527  T
442 catgcatgttttc 454  Q
    |||||||||||||    
12401528 catgcatgttttc 12401540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 369
Target Start/End: Complemental strand, 34554389 - 34554261
Alignment:
242 aactttatgtagaa-gtcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctca 340  Q
    |||| ||||||||| ||||| | |||||||||||| ||||   | ||| ||||| | ||||||||||||||||  |||||| |  ||||||  |||||||    
34554389 aactctatgtagaaagtcaatagcatctggtgctaggaagccgaatgtgtcaaaagtaaatggtataaaaacatcttgattatcagaacacgctttctca 34554290  T
341 tatttggtcactttgtttgacgcgacttt 369  Q
    | |||||||  |||| ||||||| |||||    
34554289 tgtttggtcgttttgcttgacgcaacttt 34554261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 454
Target Start/End: Complemental strand, 23484994 - 23484836
Alignment:
297 caaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagc 396  Q
    |||||||||||||| || ||||||| |  |||||   |||||||||||||| ||||||||||||||   |||| ||| ||   ||| |||| || ||||     
23484994 caaatggtataaaagcatgttgattgtcagaacatgctttctcatatttggccactttgtttgacgtagcttttagggctagttgtcccaccgttaaagg 23484895  T
397 cttgatccataatcgcacaagtggtgaaaccc-aatcaagcgtacacatgcatgttttc 454  Q
    |  ||  | ||||| ||||||||||||||||| |||||||  |||||||||||||||||    
23484894 cccgacacttaatcccacaagtggtgaaaccccaatcaagtctacacatgcatgttttc 23484836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 28225044 - 28225117
Alignment:
290 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgc 363  Q
    ||||| ||||||||||||||| || ||||||| |  ||| ||  |||||||||||||||||||||| |||||||    
28225044 tcaaaagcaaatggtataaaagcatgttgattgtcagaatacgctttctcatatttggtcactttgcttgacgc 28225117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 428
Target Start/End: Complemental strand, 7760866 - 7760771
Alignment:
333 ttttctcatatttggtcactttgtttgacgcgactttgaggacttcatgttccactgtaaaagccttgatccataatcgcacaagtggtgaaaccc 428  Q
    |||||||||  |||| ||||||  |||||||||||||||||  | | ||| ||||  |||||| |||| | ||||||| |||||||||||||||||    
7760866 ttttctcatgattggccactttacttgacgcgactttgagggttgcttgtcccaccataaaagtcttggttcataatcccacaagtggtgaaaccc 7760771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 363
Target Start/End: Original strand, 5532407 - 5532536
Alignment:
234 accctttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacaca 332  Q
    |||||||||||| |||||||||| |||||||| | |||||||| |||| |||  || ||||| | |||| |||||||| || ||||||| |   |||||     
5532407 accctttgaactctatgtagaagctcaacaacctatggtgctaggaagctaa-agtgtcaaaagtaaatagtataaaagcatgttgattgtcacaacacg 5532505  T
333 ttttctcatatttggtcactttgtttgacgc 363  Q
    ||||||||| ||||  ||||||| |||||||    
5532506 ttttctcatgtttgaccactttgcttgacgc 5532536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 49455 - 49534
Alignment:
290 tcaaatgcaaatggtataaaaacacgttgattttatgaacacattttctcatatttggtcactttgtttgacgcgacttt 369  Q
    ||||| ||||||||||||||| |||||||||| |  ||||||  ||||||| |||||  |||||||||||| || |||||    
49455 tcaaaagcaaatggtataaaagcacgttgattgtcagaacacgatttctcacatttgaccactttgtttgatgcaacttt 49534  T

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Target: scaffold0490 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 369
Target Start/End: Original strand, 6325 - 6457
Alignment:
238 tttgaactttatgtagaag-tcaacaacatctggtgctacgaagttaagtgtatcaaatgcaaatggtataaaaacacgttgattttatgaacacatttt 336  Q
    |||||||| |||||||||| |||||| | |||||||||| |||  | |  || ||||| |||||||||||| || || ||||||| |  ||||||  |||    
6325 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcagaacacgcttt 6424  T
337 ctcatatttggtcactttgtttgacgcgacttt 369  Q
    ||||| ||||| ||||||  ||||||| |||||    
6425 ctcatgtttggccactttacttgacgcaacttt 6457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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