View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_17 (Length: 466)
Name: NF1720_low_17
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 3308071 - 3308520
Alignment:
| Q |
1 |
ttttgtggttacctctagcagtatcagaaaaatttgaatgaaagtgaagacgagtagcctgaagaatcacagaaacaccgcgagcagcttcagaagccat |
100 |
Q |
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| T |
3308071 |
ttttgtggttacctctagcagtatcagaaaaatttgaatgaaagtgaagacgagtagcctgaagaatcacagaaacaccgcgagcagcttcagaagccat |
3308170 |
T |
|
| Q |
101 |
tataaaatgattatcaacttcactcaacacttgaatcatatccatattcactctctctttcactcttccaacaacttcttcatcaccatcaccatcctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308171 |
tataaaatgattatcaacttcactcaacacttgaatcatatccatattcactctctctttcactcttccaacaacttcttcatcaccatcaccatcctct |
3308270 |
T |
|
| Q |
201 |
tcctcttccacaaccatgtctgattcaaactccggcatggtaatagcacgccggagagcagcaggcaaatcaggaagaggaggaggaggcaaaggaacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308271 |
tcctcttccacaaccatgtctgattcaaactccggcatggtaatagcacgccggagagcagcaggcaaatcaggaagaggaggaggaggcaaaggaacat |
3308370 |
T |
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| Q |
301 |
cataagaaggagagaataaaagattttgttgttgttctccttgtgcaaaatctatgagagccgcgccggtgttcttgagtgaggcggcgtaggaggaatg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3308371 |
cataagaaggagagaataaaagattttgttgttgttctccttgtgcaaaatctatgagagccgcgccggtgttcttgagtgaggctgcgtaggaggaatg |
3308470 |
T |
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| Q |
401 |
cgcagccgcgaagttgttacgggcggcaaccgcctgtttcatgaagtaat |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308471 |
cgcagccgcgaagttgttacgggcggcaaccgcctgtttcatgaagtaat |
3308520 |
T |
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