View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_18 (Length: 442)
Name: NF1720_low_18
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 28877378 - 28876956
Alignment:
| Q |
18 |
agagtcaaccatcgtgataaatatagttaaagtgtgtggtctactcctccatgacaatggagggtatgagagaaaccatactccactatgcttgtatccc |
117 |
Q |
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| T |
28877378 |
agagtcaaccatcgtgataaatatagttaaagtgtgtggtttactcctcgatgacaatggagggtatgagagaaaccatactccactatgttggtatccc |
28877279 |
T |
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| Q |
118 |
cttttgcatgacacttttatgcttgtatggtaagagtgaaagttaaggtgacttgaagatttcaggttaacaaaaatatcaattgcgaagatgataaata |
217 |
Q |
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| T |
28877278 |
-ttttgcattacacttttatgcttgtatggtaagagtgaaagttaaggtgacttgaaaatttaaggttaacaaaaatatcaattgcgaaaatgataaata |
28877180 |
T |
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| Q |
218 |
ctgcactctagattttaagatattttagtgttttgacaagacatcgagatgtggctctagcatccatatgttatacgcattatgaattgtatttgtcgag |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
28877179 |
ctgtactctagattttaagatattttagtgttttgacaagacatcgagatgtggctctagcat-catatgttctacgcattatgaattgtatttgtcgag |
28877081 |
T |
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| Q |
318 |
ttgaattaataactcttaaatatatttcttatattataaccaagcatttgtggcttatccggcattaagcacaatatgaaaattcacaattaaatataat |
417 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
28877080 |
ttgaattaataactcttaaatatatttcttatattttaaccaagcatttgtggcttatcccgcattaagcacaatatgaaatttcacaattaaatataat |
28876981 |
T |
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| Q |
418 |
tcatttattgattaaagtcagaatc |
442 |
Q |
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| T |
28876980 |
tcatttattgagttaagtcagaatc |
28876956 |
T |
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