View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1720_low_2 (Length: 953)
Name: NF1720_low_2
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 783
Target Start/End: Complemental strand, 26263498 - 26262724
Alignment:
| Q |
1 |
cccaaatttatcaatgtctcatttttaggatagcaccaaatagtgaccaattaaacatgagattcgtagagaacatgtgcaccgttggttttaacttttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26263498 |
cccaaatttatcaatgtctcatttttaggatagcacccaatagtgaccaattaaacatgagattcgtagagaacatgtgcaccgttggttttaacttttg |
26263399 |
T |
|
| Q |
101 |
atgtgtgccattaatgattatgctagaccaccacgtaactagttgcctccacctcgttacgcaatatagtcacttgtcacatgcaaatatgtcatggaca |
200 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26263398 |
atgtgtaccatcaatgattatgctagaccaccacgtaactagttgcctccacctcgttacgcaacatagtcacttgtcacatgcaaatatgtcatggaca |
26263299 |
T |
|
| Q |
201 |
caacaatttcggtgaatttggttacatactttttatgttgtttgttatttgtttaaaatgcatttttgcgttataacgaacttagaagaaaaaatatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26263298 |
caacaatttcggtgaatttggttacatactttttatgttgtttgttatttgtttaaaatgcatttttgcgttataacgaacttagaagaaaaaaaatgtt |
26263199 |
T |
|
| Q |
301 |
ggttatttatgaatctttttggttaaaaataattgaggaatggcaagaagttacttattgaaaagacacaaattatcattttattgaaatgaacgcagca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
26263198 |
ggttatttatgaatctttttggttaaaaataattgaggaatggtaaaaagttacttattgaaaagacacaaattatcattttattgaaatgaacgcgcca |
26263099 |
T |
|
| Q |
401 |
acttaaaattacaaatataagctcttactaccgagctatatttaaagtgtggtcaagttatggtacacaagaatgataagatacacaagattgtttttat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26263098 |
acttaaaattacaaatataagctcttactaccgagctatatttaaagtgtggtcaagttatggtacacaagaatgataagatacacaagattgtttttac |
26262999 |
T |
|
| Q |
501 |
cattgaatcaataaattttatcattaaataaaatgaaatatgattagctttattgaattaatagtataaaagagacttatgcttagtacaagaataatag |
600 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||||| || |||||||||||||||||| ||| |||||||| |
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|
| T |
26262998 |
cattgaattaataaattttatc-----atgaaatgaaatatgatgagatttattgaattaatagta----------------------caaaaataatag |
26262926 |
T |
|
| Q |
601 |
tttacatatgcatgcatgttggacgaaacattaaagcgaagaacgttacagaaagcaactaaagaaatgtactatggttgcaacatattttatcaacgca |
700 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||| ||| |
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|
| T |
26262925 |
tttacatatgcatgcatgttggacgaaactttaaagcgaagaacgttatagaaagcaactaaagaaatgtagtatggttgcaacatattttaccaaggca |
26262826 |
T |
|
| Q |
701 |
aa-------------------gaagaaatgtactattgttctccataatcgtcattttcttctttgcgttggtaaaatatgaaaatgaaatttgctagat |
781 |
Q |
| |
|
|| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26262825 |
aagaagaaatgtactctggttgaagaaatgtactattattctccataattgtcattttcttctttgcgttggtaaaatatgaaaatgaaatttgctagat |
26262726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 846 - 947
Target Start/End: Complemental strand, 26262659 - 26262557
Alignment:
| Q |
846 |
ctggtacaaaaaaccctgctattatta-cctcatattatttgtttgaaacattattctcttttctacaacacgaatctggaatctctagtagtatattct |
944 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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|
| T |
26262659 |
ctggtacaaaaacccctgctattattaacctcatattatttgtttgaaacattattctcttttctacaacacgaatctggaatctcaagtagtatattgt |
26262560 |
T |
|
| Q |
945 |
tcg |
947 |
Q |
| |
|
||| |
|
|
| T |
26262559 |
tcg |
26262557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 491 - 537
Target Start/End: Original strand, 30018248 - 30018294
Alignment:
| Q |
491 |
ttgtttttatcattgaatcaataaattttatcattaaataaaatgaa |
537 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
30018248 |
ttgtttttattattgagtcaataaattttatcattaaattaaatgaa |
30018294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 544
Target Start/End: Complemental strand, 24622702 - 24622649
Alignment:
| Q |
491 |
ttgtttttatcattgaatcaataaattttatcattaaataaaatgaaatatgat |
544 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
24622702 |
ttgtttgtattattaaatcaataaattttatcattaaattaaatgagatatgat |
24622649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 544
Target Start/End: Complemental strand, 31718999 - 31718948
Alignment:
| Q |
493 |
gtttttatcattgaatcaataaattttatcattaaataaaatgaaatatgat |
544 |
Q |
| |
|
||||| |||| ||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
31718999 |
gttttcatcactgaatcaataaatcttaccattaaatcaaatgaaatatgat |
31718948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 536
Target Start/End: Complemental strand, 9091008 - 9090967
Alignment:
| Q |
495 |
ttttatcattgaatcaataaattttatcattaaataaaatga |
536 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
9091008 |
ttttatcattgaatcaataaattttatccttaaattaaatga |
9090967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 500 - 544
Target Start/End: Original strand, 6122141 - 6122185
Alignment:
| Q |
500 |
tcattgaatcaataaattttatcattaaataaaatgaaatatgat |
544 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
6122141 |
tcattaaatcaataaattttaccattaaattaaatgaaatatgat |
6122185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 544
Target Start/End: Complemental strand, 21765544 - 21765502
Alignment:
| Q |
502 |
attgaatcaataaattttatcattaaataaaatgaaatatgat |
544 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
21765544 |
attgaatcaataaatttcatcattagattaaatgaaatatgat |
21765502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 482 - 536
Target Start/End: Complemental strand, 31977513 - 31977459
Alignment:
| Q |
482 |
tacacaagattgtttttatcattgaatcaataaattttatcattaaataaaatga |
536 |
Q |
| |
|
|||||||| | ||||||||||||| |||||||||| | |||||||||| |||||| |
|
|
| T |
31977513 |
tacacaagttagtttttatcattggatcaataaatctcatcattaaatcaaatga |
31977459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 510 - 544
Target Start/End: Original strand, 28829745 - 28829779
Alignment:
| Q |
510 |
aataaattttatcattaaataaaatgaaatatgat |
544 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
28829745 |
aataaattttatcattaaataaaatggaatatgat |
28829779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 490 - 544
Target Start/End: Original strand, 42039113 - 42039167
Alignment:
| Q |
490 |
attgtttttatcattgaatcaataaattttatcattaaataaaatgaaatatgat |
544 |
Q |
| |
|
||||||||||||||| |||||||||||||| | |||||| |||||||| ||||| |
|
|
| T |
42039113 |
attgtttttatcattagatcaataaattttaccgttaaatcaaatgaaacatgat |
42039167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 29209763 - 29209726
Alignment:
| Q |
507 |
atcaataaattttatcattaaataaaatgaaatatgat |
544 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
29209763 |
atcaataaactttatcattaaataaaataaaatatgat |
29209726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 544
Target Start/End: Complemental strand, 15338112 - 15338055
Alignment:
| Q |
487 |
aagattgtttttatcattgaatcaataaattttatcattaaataaaatgaaatatgat |
544 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
15338112 |
aagattatttttataattggatcaataaattttatcattggatgaaattaaatatgat |
15338055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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