View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_20 (Length: 431)
Name: NF1720_low_20
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Complemental strand, 12696892 - 12696493
Alignment:
| Q |
14 |
gtgacgaagaaaacaacattaagaatgtcaacgagatcgacaagccattgttgaactagacattataaacaactatgtgagaagtcaccactgttgtcat |
113 |
Q |
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| T |
12696892 |
gtgacgaagaaaccaacattaagaatgtcaacgagatcgacaagccattgttgaactagacattataaacaattatgtgagaagtcaccactgttgtcat |
12696793 |
T |
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| Q |
114 |
cttattacatcctcccacattgccgcatccattaaggcagcaaacaatcctgacattgttgattataatgatgaccgatatgagttgcctaaggaggaaa |
213 |
Q |
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| T |
12696792 |
cttattacatcc---cacattgccgcatccattaaggcagcaaacgatccggacattgttgattataatgatgaccgatatgagttgcctaaggaggaaa |
12696696 |
T |
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| Q |
214 |
gtccttgtatgtgtgacacattttgctattataaattgtatcgaaggtttatcatcaaaatcaaaattagaaagaactttgaataaacacattctttgat |
313 |
Q |
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| T |
12696695 |
gtccttgtatgtgtgacacattttgctattatagattgtatcgaaggtttatcatcaaaatcaaaattagaaagaactttgaataaacacattctttgat |
12696596 |
T |
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| Q |
314 |
acttcaaatgctctatgaggcttgcacaacatttacagaatatgaaagattaataacagatgcaacaacattgcatgtctctttgggaatagagattcca |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12696595 |
acttcaaatgctctatgaggcttgcacaacatttacagagtatgaaagatcaataacagatgcaacaacattgcatgtctctttgggaatagagattcca |
12696496 |
T |
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