View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_21 (Length: 416)
Name: NF1720_low_21
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 11068287 - 11067906
Alignment:
| Q |
14 |
tatatttcatcgtaaagtttgggttcgagcctcgatcacgatgtcttatcaaacaattttaactgttgagctaaaattcatgaactagtcttaaattttg |
113 |
Q |
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| T |
11068287 |
tatattttatcataaagtttgggtttgagcctcgatcacgatgtccgaccaaacaattttaactgttgagctaaaattcatgaactagtcttaaattttg |
11068188 |
T |
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| Q |
114 |
tttccataaaaaagtgattaaactttatagtttctaattgtaattactttgttttgtattcataggtaagatagtgagaccacccgtgataaaaagttc- |
212 |
Q |
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| T |
11068187 |
tttccataaaaaagtgattaaactttatagtttctaattgtaattact-----ttgtattcataggtaagatagtgagaccacccgtgataaaaagttca |
11068093 |
T |
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| Q |
213 |
gtgaacatgaaagtgggtcggtaatggtgcggtaatggcgtgaacgtgaagggtaagagagattcacgacagacccaa------taagatagaagtgaga |
306 |
Q |
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| T |
11068092 |
gtgaatatgaaagtgggt-----------cggtaatggcgtgaacgtgaagggtaagagagattcacgacagacccaatagaattaagatagaagtgaga |
11068004 |
T |
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| Q |
307 |
actccaataaagggtttcgtgtgtagggtagggtccctttaactatattccattactacaatagtccaaagtagcaaccacactaacccaattaccta |
404 |
Q |
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| T |
11068003 |
actccaataaagggtttcgtgtgtagggtagggtccctttaactatattccatcacaacaatagtccaaagtagcaaccacactaacccaattaccta |
11067906 |
T |
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