View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_23 (Length: 407)
Name: NF1720_low_23
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 32 - 392
Target Start/End: Complemental strand, 39850646 - 39850282
Alignment:
| Q |
32 |
atcaggtttggggtagatataagatcactaaaggcaactatgatgctaagaaaacttaaatataaagtggcctaaaaccatgttgaaacaatatcctttg |
131 |
Q |
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| T |
39850646 |
atcaggtttggggtagatataagatcactcaaggcaactatgatgcaaataatacttaaatataaagtggcccaaaaccatgttgaaacaatatcctttg |
39850547 |
T |
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| Q |
132 |
gccctgaaacgacgtcaat----ctgggcaaaactattaacacttccgcttatttatcttctgcctctctctttgtattttctttcgatttgatgcactt |
227 |
Q |
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| T |
39850546 |
gccctgaaacgacgtcaattaatctgggcaaaactattaacacttccgcttatttatcttctgcctctctctttgtattttctttcgatttgatgtactt |
39850447 |
T |
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| Q |
228 |
ttgtattggtcatcttaagttggaagtgtcgtgaacacgttccaaacatgtgaaagtttattgaagttataattagctagtcattagaagagttaattag |
327 |
Q |
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| T |
39850446 |
ttgtattggtcatcttaagttggaagtgtggtgaacacgttccaaacatgtgaaagtttattgaagttatagttagctagtcattagaagagttaattag |
39850347 |
T |
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| Q |
328 |
tagttactggatgcctataaatatgttttgatgtactcttttattttaactttttattcgtttgt |
392 |
Q |
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| T |
39850346 |
tagttattggatgcctataaatatgttttgatgtactcttttattttaactttttattcgtttgt |
39850282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 15543913 - 15543837
Alignment:
| Q |
195 |
tctctttgtattttctttcgatttgatgcacttttgtattggtcatcttaagttggaagtgtcgtgaacacgttccaa |
272 |
Q |
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| T |
15543913 |
tctccttgtattttcatttg-tttgatgtacttttgtattgttcatctcaagttggaagtgctgtgaacaccttccaa |
15543837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 374
Target Start/End: Original strand, 20542130 - 20542219
Alignment:
| Q |
285 |
ttattgaagttataattagctagtcattagaagagttaattagtagttactggatgcctataaatatgttttgatgtactcttttatttt |
374 |
Q |
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| T |
20542130 |
ttattgaagatatgattagatggttattaggagtattagttagtagctagtggaggcctataaataggctttgatgtacacttttatttt |
20542219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 11815040 - 11815096
Alignment:
| Q |
216 |
tttgatgcacttttgtattggtcatcttaagttggaagtgtcgtgaacacgttccaa |
272 |
Q |
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| T |
11815040 |
tttgatgtacttttgtattgttcatcccaagttggaagtgttgtaaacaccttccaa |
11815096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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