View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_28 (Length: 389)
Name: NF1720_low_28
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Complemental strand, 35290010 - 35289629
Alignment:
| Q |
12 |
gaatgaggaaaaaacaagttttagcaagagagagacagagagtcatggtgttggaacttggaatgatcatgatgcaaaggggtcccacaaggaagaataa |
111 |
Q |
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| T |
35290010 |
gaatgaggaaaaaacaagttttagccagagagagacagagagtcatggtgttggaacttggtatgatcatgatgcaaaggggtcccacaaggaagaataa |
35289911 |
T |
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| Q |
112 |
cttgtttaccctgccacttccccttttgtttaaatcaatctttttatataacaattctttcaaaatctgattaatttatataacatcaattgccacttgc |
211 |
Q |
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| T |
35289910 |
cttgtttaccctgccacttccccttttgtttaaatcaatctttttatataacaattctttcaaaatctgattaatttatataacatcaattgccacttgc |
35289811 |
T |
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| Q |
212 |
atatgggtaatagcattgataacnnnnnnnngtgtgtagaacattaataacattggaattgtcatatgataataatgaatgaat----gttaattaaata |
307 |
Q |
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| T |
35289810 |
atatgtgtaatagcattgataacttttttttgtgtgtagaacattaataaaattggaattgtcatatgataataatgaatgaatgttagttaattaaata |
35289711 |
T |
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| Q |
308 |
tgtaacttttttcaaattatcaatacattaaatactggttagcaagaccagcaacacaaaacaagaagcattgttcttccga |
389 |
Q |
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| T |
35289710 |
tgtaacttttttcaaattatcaatacattaaatactggttagcaagaccagcaacacaaaacaagaagcattgttcttccga |
35289629 |
T |
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