View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_29 (Length: 385)
Name: NF1720_low_29
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 40325501 - 40325858
Alignment:
| Q |
11 |
atcatcatggaagtgtctcctcactccttgttcgatcttttggaggtctgataatcttatttctcgcttcttagctgcttctttaagtgctgctttcaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40325501 |
atcatcatggaagtgtctcctcactccttgttcgatcttttggaggtctgataatcttatttctcgcttcttagctgcttctttaagtgctgctttcaca |
40325600 |
T |
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| Q |
111 |
agcctcctagctattccctgtttacatgaatcaatagttgtcacaaaagagcttttgaataagaaaaataaaacatccttgaattttgacagaaacgaag |
210 |
Q |
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| T |
40325601 |
agcctcctagctattccctgtttacatgaatcaatagttgtcacaaaagagcttttgaataagaaaaataaaacatccttgaattttgacagaaacgaag |
40325700 |
T |
|
| Q |
211 |
cttacattgcgtggattgttgctaacgatattcacagctacttggttgctaagatgctcccataaaccatcagaagcaaagatgagaaattgatcttcag |
310 |
Q |
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| T |
40325701 |
cttacattgcgtggattgttgctaacgatattcacagctacttggttgctaagatgctcccataaaccatcagaagcaaagatgagaaattgatcttcag |
40325800 |
T |
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| Q |
311 |
gttggattttatgaactgatattgatggctcactactgagaattggcttgaaaaaggt |
368 |
Q |
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| T |
40325801 |
gttggattttatgaactgatattgatggctcactactgagaattggcttgaaaaaggt |
40325858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 30894528 - 30894452
Alignment:
| Q |
54 |
aggtctgataatcttatttctcgcttcttagctgcttctttaagtgctgctttcacaagcctcctagctattccctg |
130 |
Q |
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| T |
30894528 |
aggtctgaatatctcatttctctcttctttgccgcttcttgaagtgcagatttcacaagccgccttgcaattccctg |
30894452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 365
Target Start/End: Original strand, 28938408 - 28938552
Alignment:
| Q |
221 |
gtggattgttgctaacgatattcacagctacttggttgctaagatgctcccataaaccatcagaagcaaagatgagaaattgatcttcaggttggatttt |
320 |
Q |
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||||||||||||| || || || ||||| ||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||| || | ||| |
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| T |
28938408 |
gtggattgttgctgactatgttaacagcctcttggttgctaagctgctcccataatccatccgaagcaaatatgagaaattggtcatcaggatgaagttt |
28938507 |
T |
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| Q |
321 |
atgaactgatattgatggctcactactgagaattggcttgaaaaa |
365 |
Q |
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| T |
28938508 |
atgtgttgaaattgatggctcacagctgagaattggtttgaaaaa |
28938552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 28937860 - 28937981
Alignment:
| Q |
11 |
atcatcatggaagtgtctcctcactccttgttcgatcttttggaggtctgataatcttatttctcgcttcttagctgcttctttaagtgctgctttcaca |
110 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||||||| ||||||| || ||| || |||| ||| | ||||||||| ||||||||||||||||| |
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| T |
28937860 |
atcatcatggaagtgtctccttgttccttgttcaatcttttgaaggtctgctagtctcatctctcttttccttgctgcttctctaagtgctgctttcaca |
28937959 |
T |
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| Q |
111 |
agcctcctagctattccctgtt |
132 |
Q |
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|| || || || |||||||||| |
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| T |
28937960 |
agtcttcttgcaattccctgtt |
28937981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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