View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_3 (Length: 763)

Name: NF1720_low_3
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_3
NF1720_low_3
[»] chr5 (7 HSPs)
chr5 (327-589)||(38278986-38279248)
chr5 (638-738)||(38278801-38278899)
chr5 (476-521)||(38271828-38271873)
chr5 (483-519)||(38276955-38276991)
chr5 (470-517)||(38270557-38270604)
chr5 (216-297)||(38273944-38274025)
chr5 (670-735)||(38276740-38276805)
[»] chr8 (4 HSPs)
chr8 (442-542)||(26572729-26572826)
chr8 (229-295)||(26574026-26574092)
chr8 (669-735)||(26572527-26572593)
chr8 (212-294)||(26573813-26573895)
[»] chr3 (1 HSPs)
chr3 (264-293)||(35756369-35756398)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 3e-81; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 327 - 589
Target Start/End: Complemental strand, 38279248 - 38278986
Alignment:
Q  327 ttggctggatcaaaattgagaaatcttagagacaatcaatttagtcccctccactttcaccctaacttataagacatttcacctagattataaacatagt 426  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||| |||||||||||||||    
T  38279248 ttggctggatcaaaattgagaaatcttagagacaatcaatttaatcccctccactttcatcataatttataagacatttcacctcgattataaacatagt 38279149  T
Q  427 atta----------tgtccattgtagaactttaataaccccaacatgatgttcgtagttactttctgtcataaaatttgtctaaaaaatcatcaaaatca 516  Q
    ||||          |||||| |   |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||         |||||||    
T  38279148 attatgttgtattgtgtccaatacggaactttaataaacccaacatgatgttcgtagttacttt-tgtcataaaatttgtctaa---------aaaatca 38279059  T
Q  517 tttgtcccagttatatgaatccctatgacgttggtgtattctattctaaaaataataaaagatacatgataaa 589  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38279058 tttgtcccaattatatgaatccctatgacgttggtgtattctattctaaaaataataaaagatacatgataaa 38278986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 638 - 738
Target Start/End: Complemental strand, 38278899 - 38278801
Alignment:
Q  638 gccaaagaccgtttacgaaccttcattgtgtggaacaacttgactagttaccagttcgtgatttctcaactgtctactaattgaaaaaacaatttctcct 737  Q
    ||||||||||||||||||||||||| ||||  |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38278899 gccaaagaccgtttacgaaccttcactgtg--gaacaatttgactatttaccagttcgtgatttctcaactgtctactaattgaaaaaacaatttctcct 38278802  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 521
Target Start/End: Complemental strand, 38271873 - 38271828
Alignment:
Q  476 actttctgtcataaaatttgtctaaaaaatcatcaaaatcatttgt 521  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||||    
T  38271873 actttctgtcatgaaatttgtctcaaacatcatcaaaatcatttgt 38271828  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 519
Target Start/End: Complemental strand, 38276991 - 38276955
Alignment:
Q  483 gtcataaaatttgtctaaaaaatcatcaaaatcattt 519  Q
    |||||||||||| ||||||||||||||||||||||||    
T  38276991 gtcataaaatttatctaaaaaatcatcaaaatcattt 38276955  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 517
Target Start/End: Complemental strand, 38270604 - 38270557
Alignment:
Q  470 gtagttactttctgtcataaaatttgtctaaaaaatcatcaaaatcat 517  Q
    ||||| |||||||||||| |||||||||| ||| ||||||||||||||    
T  38270604 gtagtcactttctgtcatgaaatttgtctcaaacatcatcaaaatcat 38270557  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 38274025 - 38273944
Alignment:
Q  216 tagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaacgt 297  Q
    |||||||||||  |||| |||||| ||| ||||||||||  |||||| ||||||| || ||| ||| ||||| |||||||||    
T  38274025 tagtgatttataatttggaatgtgggttaaatttgatcataactgtgaaaacacagttcggactttttaatcaaaaaaacgt 38273944  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 735
Target Start/End: Complemental strand, 38276805 - 38276740
Alignment:
Q  670 gaacaacttgactagttaccagttcgtgatttctcaactgtctactaattgaaaaaacaatttctc 735  Q
    |||||| ||| ||||||||   |||| |||||| |||||||||||||| |||||||||| ||||||    
T  38276805 gaacaagttggctagttacggattcgcgatttcccaactgtctactaagtgaaaaaacattttctc 38276740  T

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Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 442 - 542
Target Start/End: Complemental strand, 26572826 - 26572729
Alignment:
Q  442 gaactttaataaccccaacatgatgttcgtagttactttctgtcataaaatttgtctaaaaaatcatcaaaatcatttgtcccagttatatgaatcccta 541  Q
    |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||   ||| |||||||||||||||    
T  26572826 gaactttaataaacctaacatgatgttagtagttactttctgtcataaaatttgtctcaaaaatcatcaaaattattt---ccaattatatgaatcccta 26572730  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 26574092 - 26574026
Alignment:
Q  229 tttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaac 295  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26574092 tttgaaatgtgagttgagtttgatcaagactatgtaaacacaatttggattttataatccaaaaaac 26574026  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 669 - 735
Target Start/End: Complemental strand, 26572593 - 26572527
Alignment:
Q  669 ggaacaacttgactagttaccagttcgtgatttctcaactgtctactaattgaaaaaacaatttctc 735  Q
    ||||||| ||| |||||||||  |||||| |||| |||||||||||||| |||||||||||||||||    
T  26572593 ggaacaagttggctagttaccgattcgtgctttcccaactgtctactaagtgaaaaaacaatttctc 26572527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 26573895 - 26573813
Alignment:
Q  212 attttagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaa 294  Q
    |||||||||||||||  ||||||||||||| ||||||| || || |||||||||||| | || | ||| ||||||| ||||||    
T  26573895 attttagtgatttataatttgaaatgtgagctgaatttaattaaaactgtgtaaacaaagttcgaattatataatctaaaaaa 26573813  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 35756398 - 35756369
Alignment:
Q  264 aaacacaatttggattttataatccaaaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  35756398 aaacacaatttggattttataatccaaaaa 35756369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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