View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_31 (Length: 382)
Name: NF1720_low_31
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 33387999 - 33387631
Alignment:
| Q |
1 |
tgagatggcgttggagggtcccgaagggcattgttgcaccacatgtcgtaacaaacagtatccaaagtgagtctacaagtattagtttccttaaccgttt |
100 |
Q |
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| T |
33387999 |
tgagatggcgttggagggtccccaagggcattgttgcaccacatgtcgtaacaaacagtatccaaagtgagtttacaagtattagtttccttgaccgttt |
33387900 |
T |
|
| Q |
101 |
ttctctcccaaagatagcattgtgagtacgctaaatgctccaaataatatatgtgaaacaagatctggcattagcatcaagacctgcaatgcaataatgg |
200 |
Q |
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| T |
33387899 |
ttctctcccaaagatagcattgtgagtacgctaaatgctccaaataatatatgtgaaacaagatctggcattagcatcaagacctgcaatgcaataatgg |
33387800 |
T |
|
| Q |
201 |
taaaaatgaagctagaaaagttgtcactcacaaataaatgttgctacttattttgcttcaaaggttcacttccttctagcaattgatggagtgtacacaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33387799 |
taaaaatgaagctagaaaagttgtcactcacaaataaatgttgctacttattttgcttcaaaggttcacttccttctagcatttgatggagtgtacacaa |
33387700 |
T |
|
| Q |
301 |
tcaaggaaaccgtggatgcatgtcttcttttatcgtacagctacacataacacatttagtttggtattg |
369 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33387699 |
tcaaggaaaccgtgcatggatgtcttcttttatcgtacagctacacatgacacatttagtttggtattg |
33387631 |
T |
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