View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_32 (Length: 369)
Name: NF1720_low_32
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_32 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 45459148 - 45459516
Alignment:
| Q |
1 |
tgtgtgtgtcatgttcttcattgacaatgatgttcttaattttactaataataatgttgtttcccttatctataacctgttttgacataacaaaaatatt |
100 |
Q |
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| T |
45459148 |
tgtgtgtgtcatgttcttcattgacaatgatgttcttaattttactaataataatgttgtttcccttatctataacctgttttgacataacaaaaatatt |
45459247 |
T |
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| Q |
101 |
gtcccagtaccctgcatacagcagttacagcaactacctcacccaaacccaactagcaaccgaaataaactcgagacaaacgataacagttcttgcagtc |
200 |
Q |
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| T |
45459248 |
gtcccagtaccctgcatacagcagttacagcaactacctcacccaaacccaactagcaaccgaaataaactcgagacaaacgataacagttcttgcagtc |
45459347 |
T |
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| Q |
201 |
gataacagtgggatggcacctatctcaggaaaaccaatggatgtgatcaagaaggtgttaagcatccacgtcatcctcgactactttgatgttcaaaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459348 |
gataacagtgggatggcacctatctcaggaaaaccaatggatgtgatcaagaaggtgttaagcatccacgtcatcctcgactactttgatgttcaaaaat |
45459447 |
T |
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| Q |
301 |
tccagcacatgggaaatcaacccataactgtcagcacattgtttcaatccagtggacaagctaagggat |
369 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459448 |
tccagcacatgggaaatcaacctataactgtcagcacattgtttcaatccagtggacaagctaagggat |
45459516 |
T |
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