View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_34 (Length: 366)
Name: NF1720_low_34
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 24 - 351
Target Start/End: Complemental strand, 12843681 - 12843354
Alignment:
| Q |
24 |
cgaagtggatcagattgtacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtccattgatgcttattgtgct |
123 |
Q |
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| T |
12843681 |
cgaagtggatcagagtgtacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtccattgatgcttattgtgct |
12843582 |
T |
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| Q |
124 |
tttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctac |
223 |
Q |
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| T |
12843581 |
tttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctac |
12843482 |
T |
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| Q |
224 |
tgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgtttga |
323 |
Q |
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| T |
12843481 |
tgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgtttga |
12843382 |
T |
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| Q |
324 |
tattagtcttgttgagtattgcacttat |
351 |
Q |
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| T |
12843381 |
tattagtcttgttgagtattgcacttat |
12843354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 26 - 281
Target Start/End: Original strand, 12861802 - 12862057
Alignment:
| Q |
26 |
aagtggatcagattgtacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtccattgatgcttattgtgcttt |
125 |
Q |
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| T |
12861802 |
aagtggatcagagtattgaagttggtaggagtaattggaatcaagagaatctttatgcacatcaagttgcttatgcgtccattgatgcttattttgcgtt |
12861901 |
T |
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| Q |
126 |
tagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactg |
225 |
Q |
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| T |
12861902 |
tcttatcggaatttgtttccaagcttggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagattatagtgttaatgtctactg |
12862001 |
T |
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| Q |
226 |
ttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtta |
281 |
Q |
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| T |
12862002 |
ttaagatcgattaatcactcttatgttcgtaactcattttagagattatagtgtta |
12862057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 13125837 - 13125763
Alignment:
| Q |
206 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
280 |
Q |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt |
13125763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
184 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
224 |
Q |
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| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 13125587 - 13125540
Alignment:
| Q |
304 |
tagaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
351 |
Q |
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| T |
13125587 |
tagaataatacagtgtttgattttagtgttgttgagtattgcacttat |
13125540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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