View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_36 (Length: 360)
Name: NF1720_low_36
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_36 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 49972183 - 49971838
Alignment:
| Q |
1 |
aagacaagttagggatatattgttagggagttgcaagacataaagaagaaaattgatttgtatgatgaggagtgactcttcttta----tatactcttat |
96 |
Q |
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| T |
49972183 |
aagacaagttagggatatattgttagggagttgcaagacataaagaagaaaattgatttgtatgatgaggagtgactcttctttatatatatactcttat |
49972084 |
T |
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| Q |
97 |
caagagtcatatgatattgcaataatcatgtccccccggcggctaggacattcaattccaattcnnnnnnnnnnnnnnnnnnncagaatcagtgctctcc |
196 |
Q |
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| T |
49972083 |
caagagtcatatgatattgcaataatcatgtccccccggcggctaggacattcaattccaattc------aagaagaagaagacagaatcagtgctctcc |
49971990 |
T |
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| Q |
197 |
cagattcacttcttattcacattctttcttttcttcctacctaaaatgccgccgtcacaatcattctcttcttctcgcaactcattctcaatttcgatga |
296 |
Q |
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| T |
49971989 |
cagattcacttcttattcacattctttcttttcttcctaccaaaaatgccgccgtcacaatcatcctcttcttctcgcaactcattctcaatttcgatga |
49971890 |
T |
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| Q |
297 |
aaatcataaaggnnnnnnnttatgcagggcacattgggaggacccagatatt |
348 |
Q |
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| T |
49971889 |
aaatcataaaggaaaaaaattatgcagggcacattgggaggacccagatatt |
49971838 |
T |
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Target: scaffold0543 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 3963 - 3910
Alignment:
| Q |
180 |
cagaatcagtgctctcccagattcacttcttattcacattctttcttttcttcc |
233 |
Q |
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| T |
3963 |
cagaatcagtgctctaccggattcacttctttatcacattctttcttttcttcc |
3910 |
T |
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Target: scaffold0492 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 5509 - 5456
Alignment:
| Q |
180 |
cagaatcagtgctctcccagattcacttcttattcacattctttcttttcttcc |
233 |
Q |
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| T |
5509 |
cagaatcagtgctctaccggattcacttctttatcacattctttcttttcttcc |
5456 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 43288339 - 43288293
Alignment:
| Q |
58 |
ttgtatgatgaggagtgactcttctttatatactcttatcaagagtc |
104 |
Q |
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| T |
43288339 |
ttgtaagatgaggagtgcctcctctttataaactcttatcaagagtc |
43288293 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 8902424 - 8902382
Alignment:
| Q |
66 |
tgaggagtgactcttctttatatactcttatcaagagtcatat |
108 |
Q |
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| T |
8902424 |
tgaggagtgtctcatctttataaactcttatcaagagtcatat |
8902382 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 10542092 - 10542137
Alignment:
| Q |
58 |
ttgtatgatgaggagtgactcttctttatatactcttatcaagagt |
103 |
Q |
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| T |
10542092 |
ttgtaagatgaggagtgtctcctctttataaactcttatcaagagt |
10542137 |
T |
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