View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_37 (Length: 357)

Name: NF1720_low_37
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_37
NF1720_low_37
[»] chr5 (17 HSPs)
chr5 (13-346)||(33109829-33110160)
chr5 (15-233)||(25992242-25992453)
chr5 (25-180)||(26405187-26405344)
chr5 (49-228)||(14302107-14302288)
chr5 (13-221)||(8297715-8297924)
chr5 (75-197)||(30097600-30097725)
chr5 (44-236)||(26045621-26045816)
chr5 (65-221)||(10174924-10175081)
chr5 (40-236)||(13953900-13954101)
chr5 (43-212)||(7682806-7682977)
chr5 (77-233)||(33258580-33258729)
chr5 (13-197)||(7194928-7195114)
chr5 (13-126)||(8731279-8731391)
chr5 (37-126)||(5187283-5187372)
chr5 (143-232)||(21398079-21398168)
chr5 (149-236)||(7161783-7161868)
chr5 (143-183)||(7403666-7403706)
[»] chr1 (20 HSPs)
chr1 (25-236)||(11439659-11439871)
chr1 (44-205)||(46768435-46768600)
chr1 (43-236)||(34775100-34775296)
chr1 (13-160)||(27102488-27102636)
chr1 (13-236)||(32882595-32882817)
chr1 (43-236)||(10785118-10785312)
chr1 (13-139)||(31290648-31290774)
chr1 (39-139)||(9312993-9313093)
chr1 (43-218)||(32863203-32863381)
chr1 (13-87)||(7451888-7451962)
chr1 (160-235)||(4430921-4430997)
chr1 (43-221)||(52278530-52278704)
chr1 (13-100)||(4431042-4431129)
chr1 (39-133)||(9557241-9557336)
chr1 (77-123)||(46603705-46603751)
chr1 (108-180)||(6582973-6583048)
chr1 (175-235)||(9313097-9313157)
chr1 (156-236)||(16149004-16149083)
chr1 (33-124)||(37200485-37200576)
chr1 (155-236)||(41126261-41126342)
[»] chr3 (13 HSPs)
chr3 (43-222)||(48893010-48893191)
chr3 (15-233)||(28937357-28937562)
chr3 (13-180)||(14280176-14280344)
chr3 (25-221)||(33143591-33143788)
chr3 (43-218)||(50518746-50518922)
chr3 (38-221)||(25647929-25648112)
chr3 (18-221)||(4170987-4171193)
chr3 (25-228)||(37123618-37123812)
chr3 (43-136)||(14893261-14893354)
chr3 (66-180)||(14194215-14194331)
chr3 (77-133)||(46358073-46358129)
chr3 (143-233)||(25594308-25594396)
chr3 (169-233)||(14755047-14755111)
[»] chr7 (15 HSPs)
chr7 (44-221)||(24324456-24324636)
chr7 (36-236)||(42532909-42533111)
chr7 (25-236)||(1321023-1321234)
chr7 (25-236)||(33719194-33719407)
chr7 (25-114)||(6726058-6726147)
chr7 (13-119)||(8745477-8745583)
chr7 (39-125)||(16828753-16828839)
chr7 (39-180)||(16954774-16954916)
chr7 (143-199)||(6492890-6492946)
chr7 (66-126)||(39013583-39013643)
chr7 (146-236)||(6716501-6716589)
chr7 (15-122)||(28534134-28534240)
chr7 (43-126)||(44755909-44755991)
chr7 (152-218)||(43235601-43235667)
chr7 (46-92)||(43235685-43235731)
[»] chr2 (17 HSPs)
chr2 (13-217)||(7696209-7696415)
chr2 (19-221)||(34230446-34230648)
chr2 (40-219)||(4974990-4975172)
chr2 (40-219)||(4992898-4993080)
chr2 (43-236)||(10173236-10173432)
chr2 (65-236)||(41113419-41113590)
chr2 (165-236)||(41086571-41086642)
chr2 (143-221)||(12343061-12343139)
chr2 (13-126)||(25504516-25504628)
chr2 (96-203)||(37770360-37770468)
chr2 (49-126)||(24165839-24165916)
chr2 (33-119)||(15361072-15361158)
chr2 (46-139)||(13337578-13337671)
chr2 (39-139)||(41086457-41086557)
chr2 (36-123)||(33788275-33788362)
chr2 (39-103)||(33533397-33533461)
chr2 (146-236)||(1269709-1269797)
[»] scaffold0050 (1 HSPs)
scaffold0050 (43-221)||(36951-37131)
[»] chr8 (7 HSPs)
chr8 (45-236)||(10248224-10248419)
chr8 (65-221)||(17656415-17656574)
chr8 (144-236)||(43312399-43312491)
chr8 (141-219)||(22325853-22325931)
chr8 (73-179)||(8862308-8862418)
chr8 (39-236)||(12197728-12197927)
chr8 (39-236)||(12442156-12442355)
[»] chr6 (8 HSPs)
chr6 (25-236)||(20701437-20701653)
chr6 (43-180)||(6860317-6860457)
chr6 (25-137)||(3880251-3880363)
chr6 (15-102)||(16180486-16180572)
chr6 (65-139)||(5607654-5607728)
chr6 (142-195)||(13098346-13098400)
chr6 (143-196)||(15120362-15120415)
chr6 (142-190)||(16180674-16180722)
[»] chr4 (18 HSPs)
chr4 (46-236)||(16832680-16832872)
chr4 (65-236)||(38636913-38637084)
chr4 (39-236)||(41117621-41117818)
chr4 (43-126)||(48098647-48098730)
chr4 (45-236)||(49747757-49747950)
chr4 (25-126)||(42719497-42719598)
chr4 (42-126)||(28967216-28967300)
chr4 (143-221)||(25753417-25753495)
chr4 (13-123)||(35947934-35948044)
chr4 (148-236)||(22810925-22811011)
chr4 (146-221)||(19311128-19311203)
chr4 (146-220)||(48098580-48098651)
chr4 (13-103)||(9262807-9262897)
chr4 (151-236)||(39420803-39420888)
chr4 (25-178)||(2061471-2061627)
chr4 (146-230)||(53823185-53823266)
chr4 (143-226)||(19814978-19815064)
chr4 (70-138)||(25754204-25754272)
[»] scaffold0200 (1 HSPs)
scaffold0200 (156-221)||(19622-19687)
[»] scaffold0063 (1 HSPs)
scaffold0063 (43-236)||(58357-58552)
[»] scaffold1384 (1 HSPs)
scaffold1384 (144-236)||(1416-1508)
[»] scaffold0119 (1 HSPs)
scaffold0119 (146-236)||(41905-41993)
[»] scaffold0499 (1 HSPs)
scaffold0499 (142-195)||(6810-6864)


Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 33109829 - 33110160
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  33109829 aacagcaaatattattaaacaatcaaatctctgcttaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtata--gccgaaacac 33109926  T
Q  113 ccgaaaataaacactttaaaaacaccctatgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  33109927 ccgaaaataaacactttaaaaacaccctatgacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaac 33110026  T
Q  213 gatatccaataccacccatcgtcaattaaatgtgagttagtcgaatcttgctaggtctacaaaggtcatgggatgtaagaatcactcaaaacttagcaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110027 gatatccaataccacccatcgtcaattaaatgtgagttagtcgaatcttgctaggtctacaaaggtcatgggatgtaagaatcactcaaaacttagcaga 33110126  T
Q  313 aaacttgacaatttgacattttactcatgttcat 346  Q
    ||||||||||||||||||||||||||||||||||    
T  33110127 aaacttgacaatttgacattttactcatgttcat 33110160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 25992453 - 25992242
Alignment:
Q  15 cagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacaccc 114  Q
    ||||||||| ||||||| || || |||||||||||||||||||| | |  ||||||| ||| |||||||||||||| ||| |||||||  || |||||||    
T  25992453 cagcaaatattattaaacaaccagatctctgctcaagacgaacagagaccggtgaaaatgataatacaaacaaaaggcgccgtatatatgcggaacaccc 25992354  T
Q  115 gaaaataaacactttaaaaaca-ccctatgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacg 213  Q
    || |||||||||  |||||||| ||| ||||||||||||||||||||        |||||||||||| |||||||||| ||| | ||||| |||||||||    
T  25992353 gacaataaacaccctaaaaacaccccaatgacaacacccaccaaaat--------ccacctaaaacagaccccttcacgaaagcaaccactgtaaaaacg 25992262  T
Q  214 atatccaataccacccatcg 233  Q
    ||||||||||||||||||||    
T  25992261 atatccaataccacccatcg 25992242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 26405187 - 26405344
Alignment:
Q  25 tattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaac 124  Q
    ||||||| || || || ||||||||||||||||| | |  |||||||||||||||||||||||||| ||  |||||||| || |||||||||||||||||    
T  26405187 tattaaacaaccagatttctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacacccgaaaataaac 26405286  T
Q  125 actttaaaaacaccc--tatgacaacacccaccaaaatacatgtcaccacctaaaaca 180  Q
    || ||||||||||||   | ||||||| ||||||||||||| ||||||||||||||||    
T  26405287 accttaaaaacacccctgaggacaacaaccaccaaaatacacgtcaccacctaaaaca 26405344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 228
Target Start/End: Original strand, 14302107 - 14302288
Alignment:
Q  49 aagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacaccct--atgaca 146  Q
    ||||| |||| ||||  |||||| ||| |||| |||||| |||||| ||||||||  | ||||||| |||||||| |   |||||||||||   ||||||    
T  14302107 aagacaaacaaaaatcagtgaaattgaaaatataaacaagagacgccgtatatagaaggaacacccaaaaataaaaatcctaaaaacacccctgatgaca 14302206  T
Q  147 acacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacc 228  Q
    ||||||||||||||||| |||||||||||||||| |  ||||| | ||||||||||  ||||||||||||||||| ||||||    
T  14302207 acacccaccaaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacc 14302288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 8297924 - 8297715
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    ||||||||||  |||| || ||||| |||||| ||||||||||||| | |  |||||||||||||||||||| ||||| || |||| |||| || |||||    
T  8297924 aacagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaatacaaa-aaaaggcgttgtacataggcggaacac 8297826  T
Q  113 ccgaaaataaacactttaaaaacaccct--atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaa 210  Q
    | ||||||| ||||  |||||||||||   | || |||| |||||||||||||  ||||||||||||||| || ||||||  |||| |||||  ||||||    
T  8297825 ctgaaaatacacaccctaaaaacacccctgaggataacatccaccaaaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaa 8297726  T
Q  211 acgatatccaa 221  Q
    ||||| |||||    
T  8297725 acgatttccaa 8297715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 30097725 - 30097600
Alignment:
Q  75 agaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaa-caccct--atgacaacacccaccaaaatacatgtcacca 171  Q
    ||||||||||| |||||||| |||||||| || |||||||||||||||||||  |||||| || ||   ||||||||||||||||||||||| |||||||    
T  30097725 agaatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccctaaaaaacatccatgatgacaacacccaccaaaatacacgtcacca 30097626  T
Q  172 cctaaaacaaaccccttcacaaaaac 197  Q
    ||||||||| || ||||||| |||||    
T  30097625 cctaaaacagactccttcacgaaaac 30097600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 44 - 236
Target Start/End: Original strand, 26045621 - 26045816
Alignment:
Q  44 tgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaa---caccct 140  Q
    ||||||| ||||||| | |  ||||||  |||| ||||||||||||| ||| |||||||| || |||| || |||||||||||  ||||||   | ||      
T  26045621 tgctcaaaacgaacagagaccggtgaagttgagcatacaaacaaaaggcgccgtatatagacggaacatccaaaaataaacaccctaaaaaacgcccctg 26045720  T
Q  141 atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    | |||||||||||||||||| || |||||||||||||||| ||  |||||  |||| |||||| |||||||||| |||||| ||| ||||||||||    
T  26045721 aggacaacacccaccaaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtca 26045816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 10175081 - 10174924
Alignment:
Q  65 ggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacacc--ctatgacaacacccaccaaaatac 162  Q
    ||||||| | |||||||||||||||| |   |||||||| | ||||||| |||| ||||||   ||||||||||  | | |||||||||||||||| |||    
T  10175081 ggtgaaattaagaatacaaacaaaaggcatcgtatataggcaaaacacctgaaa-taaacatcctaaaaacacctccgaggacaacacccaccaaagtac 10174983  T
Q  163 atgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 221  Q
    | || ||||||||||||| || |||||  |||||||||||| |||||||||||||||||    
T  10174982 acgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacgatatccaa 10174924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 13953900 - 13954101
Alignment:
Q  40 tctctgctcaagacgaacataaattggtg--aaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaac-a 136  Q
    ||||||||||||||||||| | |  ||||  ||||||||| ||||||| |||| ||| |||||||| || |||||| |||||||||||| |||||||  |    
T  13953900 tctctgctcaagacgaacagagaccggtgtgaaactgagagtacaaactaaaggcgccgtatataggcggaacacctgaaaataaacaccttaaaaaata 13953999  T
Q  137 ccct--atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgt 234  Q
    ||||  | |||||| ||||||||||||||||||| | ||||||||| ||   ||||  || ||||| || |||||||| |||||| | | ||||||||||    
T  13954000 cccttgaggacaactcccaccaaaatacatgtcatctcctaaaacagactttttcatgaagacgactactgtaaaaacaatatcccacatcacccatcgt 13954099  T
Q  235 ca 236  Q
    ||    
T  13954100 ca 13954101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 7682977 - 7682806
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacaccctat 142  Q
    ||||||||||||||  || |  ||||||||||||||||||||  |||| ||  |||||||| || |||| |||||||||| |||   ||||| ||  |||    
T  7682977 ctgctcaagacgaatgtagacgggtgaaactgagaatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcacccaaaaaatact-tat 7682879  T
Q  143 ga---caacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaac 212  Q
    ||   |||||||||||||||||||  ||||||||||||| | || | ||||||||||||||||||||||||||    
T  7682878 gagaacaacacccaccaaaatacacatcaccacctaaaatagactctttcacaaaaacgaccaccgtaaaaac 7682806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 233
Target Start/End: Original strand, 33258580 - 33258729
Alignment:
Q  77 aatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaaca-ccctatgacaacacccaccaaaatacatgtcaccaccta 175  Q
    |||||||| ||||| ||| |||||||   |||||||||||||||||||||  |||||||| ||| | ||||||||||| ||||||        |||||||    
T  33258580 aatacaaataaaaggcgccgtatatatgtgaaacacccgaaaataaacaccataaaaacatcccaaagacaacacccatcaaaat--------ccaccta 33258671  T
Q  176 aaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcg 233  Q
    ||||| | | |||||| ||| ||||||| |||||||||||||||||||||| ||||||    
T  33258672 aaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcg 33258729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 7194928 - 7195114
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    ||||||||||  ||||||| || || ||| || ||||||||||||| | || | |||||||||||||| | ||||||   |  || ||||  || ||||     
T  7194928 aacagcaaattttattaaacaaccagatccctactcaagacgaacaaagatcgatgaaactgagaatatagacaaaatgagtcgtttatatgcggaacat 7195027  T
Q  113 ccgaaaataaacactttaaaaacacc-ctatg-acaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaac 197  Q
    || |||||||||||  |||||||||| ||  | |||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  7195028 ccaaaaataaacaccctaaaaacaccgctgcggacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacaaaaac 7195114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 8731391 - 8731279
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    ||||||||||  ||||||| ||||| ||| ||||||||||| |||| |||  |||||  | ||||||||||||||||| ||| |||||||| ||||||||    
T  8731391 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 8731293  T
Q  113 ccgaaaataaacac 126  Q
    || |||||||||||    
T  8731292 ccaaaaataaacac 8731279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 5187372 - 5187283
Alignment:
Q  37 aaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacac 126  Q
    |||||||||||||||| || || | || ||||||| |||||||||||||||||| ||| | ||||||  ||| |||||||||||||||||    
T  5187372 aaatctctgctcaagaagagcagagatcggtgaaattgagaatacaaacaaaaggcgccgcatatagatgaagcacccgaaaataaacac 5187283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 21398079 - 21398168
Alignment:
Q  143 gacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatc 232  Q
    ||||||||  || |||||||| ||||||| |||||||| || ||||||| ||||| |||   |||||||||||||||   ||||||||||    
T  21398079 gacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatatcccgcaccacccatc 21398168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 7161783 - 7161868
Alignment:
Q  149 acccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    ||||||||||| ||||  ||| |||||||||| || ||||||||||||| | ||| ||||| ||||| ||||  |||||||| |||||    
T  7161783 acccaccaaaacacat--cactacctaaaacagactccttcacaaaaacaagcactgtaaacacgatttccaccaccacccaacgtca 7161868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 7403706 - 7403666
Alignment:
Q  143 gacaacacccaccaaaatacatgtcaccacctaaaacaaac 183  Q
    |||||||||||||||||| || ||||||||| |||||||||    
T  7403706 gacaacacccaccaaaattcacgtcaccaccgaaaacaaac 7403666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 11439659 - 11439871
Alignment:
Q  25 tattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaac 124  Q
    ||||||| || || |||||||||||||||||||| | || ||||||| |||||||||||||||||| ||   ||||||| || |||| ||||||||||||    
T  11439659 tattaaacaaccagatctctgctcaagacgaacaaagatcggtgaaaatgagaatacaaacaaaaggcgacatatatagacggaacatccgaaaataaac 11439758  T
Q  125 actttaaaaacaccct-atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaata 223  Q
    ||  ||||| | |||| | ||||||| ||||||||||||| |||||||||||||||| | |||||||| ||| | ||||||||||||| ||||||||| |    
T  11439759 accctaaaatccccctgaagacaacatccaccaaaatacacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgtaaaaatgatatccaaca 11439858  T
Q  224 ccacccatcgtca 236  Q
    ||||  |||||||    
T  11439859 ccacttatcgtca 11439871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 46768600 - 46768435
Alignment:
Q  44 tgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgct-gtatatagccgaaacacccgaaaataaacactttaaaaa---caccc 139  Q
    ||||||||||||||| | |||||||||| |||| ||||||||||||| |||  |||| ||| || |||||||||||||||||||  ||||||   | |||    
T  46768600 tgctcaagacgaacagagattggtgaaattgagcatacaaacaaaaggcgcccgtatgtaggcggaacacccgaaaataaacaccctaaaaaacaccccc 46768501  T
Q  140 tatgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccg 205  Q
     | |||||||||||||||||| || |||||||||||||||| || ||||||| |||||||||||||    
T  46768500 gaggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaacgaccaccg 46768435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 34775296 - 34775100
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacaccctat 142  Q
    |||||||||||||||| | |  | | || |||||||||||||| |||| ||| |||||||| || ||||||||||||||||||| |||||||   || ||    
T  34775296 ctgctcaagacgaacaaagaccgataaagctgagaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaaaataccaat 34775197  T
Q  143 ga---caacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    ||   ||||||||||||||||||| |||| ||||||||||| || ||||||| |||||||| || |||||||||| |||| | || |||| ||||||    
T  34775196 gaggacaacacccaccaaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacactacccgtcgtca 34775100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 27102636 - 27102488
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    ||||||||||  ||||||| || || ||||||| |||||||||||| | | ||||||| |||||||||||||||||||  || |||||||| || |||||    
T  27102636 aacagcaaattttattaaacaaccagatctctgttcaagacgaacaaagactggtgaacctgagaatacaaacaaaaggtgccgtatataggcggaacac 27102537  T
Q  113 ccgaaaataaacactttaaaaacaccct-atgacaacacccaccaaaat 160  Q
    ||||||||||||||  |||||||||| | | ||||||||||||||||||    
T  27102536 ccgaaaataaacaccctaaaaacaccatgaggacaacacccaccaaaat 27102488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 32882817 - 32882595
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    ||||||||||  ||||||| ||||| ||| |||||||||||||||| |   |||  || | || ||||||||| |||| ||| |||||||| |  |||||    
T  32882817 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagac--tgg--aatcagaaaatacaaactaaaggcgccgtatataggcagaacac 32882722  T
Q  113 ccgaaaataaacactttaaaa---acaccctatgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaa 209  Q
    ||||||||||||||  |||||   || ||| | ||||||||||||||||||| |  ||||| ||||||||  || ||||||| ||||||| ||| |||||    
T  32882721 ccgaaaataaacaccctaaaagacacccccgaggacaacacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaa 32882622  T
Q  210 aacgatatccaataccacccatcgtca 236  Q
     ||||||||||| ||||||||||||||    
T  32882621 cacgatatccaacaccacccatcgtca 32882595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 236
Target Start/End: Original strand, 10785118 - 10785312
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaa-caccct- 140  Q
    |||||||||||||| | | |  ||| ||||||||||||||||| ||| |||| ||| | || || ||||||| || |||||||| ||||||| ||||||     
T  10785118 ctgctcaagacgaatagagacgggtaaaactgagaatacaaactaaaaacgccgtacaaagtcggaacacccaaatataaacaccttaaaaaacaccctt 10785217  T
Q  141 -atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
     | ||||||||||| |||||||||||| | ||| ||||||| || ||||||| ||||||||  | | ||||||||||||||  ||||||||||||||    
T  10785218 gaggacaacacccatcaaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgatatcca--accacccatcgtca 10785312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 31290648 - 31290774
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    |||| |||||||||||||| || || |||| | ||||| ||||||| | | |||||| ||||||||||||||||| || | || ||| ||| || |||||    
T  31290648 aacatcaaatactattaaacaaccagatctttactcaaaacgaacagagactggtgagactgagaatacaaacaagaggcactatatgtagacggaacac 31290747  T
Q  113 ccgaaaataaacactttaaaaacaccc 139  Q
    ||||||||||||||  |||||||||||    
T  31290748 ccgaaaataaacaccataaaaacaccc 31290774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 9312993 - 9313093
Alignment:
Q  39 atctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacacc 138  Q
    |||||||||||||||||||| | |  ||||||||| | ||||||| |||||| ||  |||||||| || |||||||||||||||||||  ||||||||||    
T  9312993 atctctgctcaagacgaacagagaccggtgaaacttataatacaatcaaaaggcgtcgtatataggcggaacacccgaaaataaacaccctaaaaacacc 9313092  T
Q  139 c 139  Q
    |    
T  9313093 c 9313093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 32863203 - 32863381
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaaca-ctttaaaaacaccc-- 139  Q
    |||||||||||||| |  ||||||||||| ||||||||||||| |||   |  |||||||| || |||||| ||||||||||| |   ||||||||||      
T  32863203 ctgctcaagacgaataggaattggtgaaaatgagaatacaaactaaatgtgtcgtatataggcggaacacctgaaaataaacaccaagaaaaacacccaa 32863302  T
Q  140 tatgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatc 218  Q
     | ||||||||||||||| ||||| |||||| ||||||||| |  ||| ||| ||||||||||  ||||| ||||||||    
T  32863303 gaggacaacacccaccaacatacacgtcaccgcctaaaacagaatcctccacgaaaacgaccattgtaaacacgatatc 32863381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 7451888 - 7451962
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaa 87  Q
    ||||||||||| ||||||| ||  | |||||||||||||||||||| | |  |||||||||||||||||||||||    
T  7451888 aacagcaaatattattaaacaactagatctctgctcaagacgaacagagaccggtgaaactgagaatacaaacaa 7451962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 4430997 - 4430921
Alignment:
Q  160 tacatgtcaccacctaaaacaaaccccttcacaaaaa-cgaccaccgtaaaaacgatatccaataccacccatcgtc 235  Q
    |||| ||||||||||| ||||||| ||||| |||||| | ||||||||||||||||||||||| |||| || |||||    
T  4430997 tacacgtcaccacctagaacaaactccttcgcaaaaaacaaccaccgtaaaaacgatatccaaaaccatccgtcgtc 4430921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 52278704 - 52278530
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacacc-cta 141  Q
    |||||||||||||||| | | || |||||| |||||||||| | || | |||  ||||||| || |||||| |||||||||||| ||||| ||||| | |    
T  52278704 ctgctcaagacgaacagagactg-tgaaacagagaatacaagctaagg-cgccatatataggcggaacacctgaaaataaacaccttaaagacaccacga 52278607  T
Q  142 tgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 221  Q
     ||||||||||||||||  ||| | ||||||||  ||| ||| ||| ||| |||||||||||| ||||| ||||||||||    
T  52278606 ggacaacacccaccaaa--acacgccaccacctcgaac-aacgcctacacgaaaacgaccaccataaaagcgatatccaa 52278530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 4431129 - 4431042
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtata 100  Q
    ||||||||||  ||||||| || || |||||||||||||||||| | | |  ||||||| |||||||||||||||||| ||| |||||    
T  4431129 aacagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaaattgagaatacaaacaaaaggcgccgtata 4431042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 9557336 - 9557241
Alignment:
Q  39 atctctgctcaagacgaa-cataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaa 133  Q
    |||||||||||||||||| || | |  |||||| ||||||||||||| |||| ||   |||||||  |||||||||||||||||||||| ||||||    
T  9557336 atctctgctcaagacgaaacagagaccggtgaatctgagaatacaaataaaaaacatcgtatataaacgaaacacccgaaaataaacaccttaaaa 9557241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 46603751 - 46603705
Alignment:
Q  77 aatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaa 123  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||||    
T  46603751 aatacaaacaaaagacgttgtatataggcggaacacccgaaaataaa 46603705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 6582973 - 6583048
Alignment:
Q  108 aacacccgaaaataaacactttaaaaa-caccct--atgacaacacccaccaaaatacatgtcaccacctaaaaca 180  Q
    |||||||||||||||||||  |||||| ||| |   |||| |||||||||||||||||| ||||||||||||||||    
T  6582973 aacacccgaaaataaacaccataaaaaacactcatgatgataacacccaccaaaatacacgtcaccacctaaaaca 6583048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 9313097 - 9313157
Alignment:
Q  175 aaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtc 235  Q
    |||||| |||||||||||||| | ||||  || |||||||||||||||||||| |||||||    
T  9313097 aaaacataccccttcacaaaagcaaccattgttaaaacgatatccaataccactcatcgtc 9313157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 16149083 - 16149004
Alignment:
Q  156 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    |||||||| |||||||||||||||| || ||||||   ||||||| || | ||||||||||||||| | ||||||||||||    
T  16149083 aaaatacacgtcaccacctaaaacagacaccttcatgtaaacgactactg-aaaaacgatatccaaaagcacccatcgtca 16149004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 37200576 - 37200485
Alignment:
Q  33 aatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaac 124  Q
    |||||||| | ||||||||||||||| | |  ||||| || |||||||||||| ||||||   |||||||| || |||| ||||||||||||    
T  37200576 aatcaaatttttgctcaagacgaacagagaccggtgataccgagaatacaaactaaagacatcgtatataggcggaacatccgaaaataaac 37200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 41126261 - 41126342
Alignment:
Q  155 caaaatacatgtcaccacctaaaacaaaccccttcacaaaaac-gaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    |||||||||| ||||||||||||||| || | ||||| |||||  ||||| || |||||||||||||  ||||||||||||||    
T  41126261 caaaatacatatcaccacctaaaacagacgcattcacgaaaacaaaccactgt-aaaacgatatccatcaccacccatcgtca 41126342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 48893010 - 48893191
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacaccct-- 140  Q
    |||||||||||||||| | |  | |||||||||||||||||||||| || || |||||||   | |||| |||||||||||||||||||||||||||       
T  48893010 ctgctcaagacgaacaaagacagatgaaactgagaatacaaacaaacgatgccgtatataagaggaacatccgaaaataaacactttaaaaacacccctg 48893109  T
Q  141 atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaat 222  Q
    | |||||||||||||||||||||||||||||||||||| | || |||| ||||||||||  || |||||||| |||||||||    
T  48893110 aagacaacacccaccaaaatacatgtcaccacctaaaagagactcctttacaaaaacgattacggtaaaaacaatatccaat 48893191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 28937357 - 28937562
Alignment:
Q  15 cagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacaccc 114  Q
    ||||||||| |||||||||| || ||||||| |||||||||| | | |  ||||||| ||||||||||||       ||| |||||||  || |||||||    
T  28937357 cagcaaatattattaaataaccagatctctgttcaagacgaagagagaccggtgaaattgagaatacaaag------cgccgtatataagcggaacaccc 28937450  T
Q  115 gaaaataaacactttaaaaacacccta-tgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacg 213  Q
    ||||||||||||  ||||||||||| | |||||||||||||||||||        |||||||||||| |||||||||| |||  |||||| |||||||||    
T  28937451 gaaaataaacaccctaaaaacaccccaatgacaacacccaccaaaat--------ccacctaaaacagaccccttcacgaaagtgaccactgtaaaaacg 28937542  T
Q  214 atatccaataccacccatcg 233  Q
    ||||||||||||||||||||    
T  28937543 atatccaataccacccatcg 28937562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 14280176 - 14280344
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    ||||| ||||| ||||||| ||||| |||| ||||||||||||||| | || | ||||||||| ||||||||  |||| ||| |||||||| || |||||    
T  14280176 aacagtaaatattattaaacaatcagatctttgctcaagacgaacaaagatcgatgaaactgataatacaaattaaaggcgccgtatataggcggaacac 14280275  T
Q  113 ccgaaaataaacactttaaaaacaccct-atgacaacacccaccaaaatacatgtcaccacctaaaaca 180  Q
    |||||| |||||||| | |||| | ||| | |||||||||||| |||||||| ||||||||||||||||    
T  14280276 ccgaaagtaaacactctgaaaatatcctgaggacaacacccactaaaatacacgtcaccacctaaaaca 14280344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 33143591 - 33143788
Alignment:
Q  25 tattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaac 124  Q
    ||||||| || || ||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||   ||||||| || |||||||||||| ||||    
T  33143591 tattaaacaaccagatctctgctcaaggcgaacataaatcggtgaaactgagaatacaaccaaaaggcgtcatatataggcggaacacccgaaaa-aaac 33143689  T
Q  125 actttaaaaacaccc--tatgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 221  Q
    ||   |||||| |||   | || |||| |||||| || ||| ||||||||||||||||||| ||||||| ||||| ||||| | | |||||||||||||    
T  33143690 acccaaaaaactcccaagaggataacatccaccataaaacacgtcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaa 33143788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 50518746 - 50518922
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacaccc--t 140  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||  |  |||||||| || |||||||||||||||||||  |||||||||||       
T  50518746 ctgctcaagacgaacagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacacccgaaaataaacaccctaaaaacacccatg 50518845  T
Q  141 atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatc 218  Q
    | ||| ||||||| |||||||||  |||||| |||||||| || |||||||  | || ||||| ||||||||||||||    
T  50518846 aggaccacacccaacaaaatacacctcaccatctaaaacagactccttcac-gataccaccactgtaaaaacgatatc 50518922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 38 - 221
Target Start/End: Complemental strand, 25648112 - 25647929
Alignment:
Q  38 aatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacac 137  Q
    |||| ||| |||||||||||| | || ||||||||| |||||||||||||||| ||| |||||||| || |||||||||||||||||||  |||||||||    
T  25648112 aatccctgttcaagacgaacagagatcggtgaaactaagaatacaaacaaaaggcgcagtatatagacggaacacccgaaaataaacaccctaaaaacac 25648013  T
Q  138 cc--tatgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 221  Q
     |   | ||| ||||||||||||  |||||||||||| ||||||| || || ||||  |||| ||||| | |||||||||||||||    
T  25648012 acatgaggaccacacccaccaaataacatgtcaccacataaaacatactccatcac-gaaaccaccactg-aaaaacgatatccaa 25647929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 4171193 - 4170987
Alignment:
Q  18 caaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaa 117  Q
    ||||| |||||||| ||  ||||| ||||| |||||||||| | |  |||||||||||||||||||||||||| ||  |||||||| || |||||| |||    
T  4171193 caaattctattaaacaactaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 4171094  T
Q  118 aataaacactttaaaaacaccct--atgacaacacccac-caaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacga 214  Q
    |||||||||  |||||||| | |  | ||||||||||||  |||||| | |||| ||||||||| | || ||||||| |||| |||||  ||| ||| ||    
T  4171093 aataaacaccctaaaaacatcattgaggacaacacccacaaaaaatatacgtcatcacctaaaatagactccttcacgaaaatgaccattgtataaatga 4170994  T
Q  215 tatccaa 221  Q
    |||||||    
T  4170993 tatccaa 4170987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 37123812 - 37123618
Alignment:
Q  25 tattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaac 124  Q
    ||||||| ||| |||||||||||||||||||||  | |  | |||||||||||||||||||||||| ||   || |||| || |||||||||||||||||    
T  37123812 tattaaacaattaaatctctgctcaagacgaactgagaccgatgaaactgagaatacaaacaaaaggcgtcctacatagtcggaacacccgaaaataaac 37123713  T
Q  125 actttaaaaacaccctatgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaatac 224  Q
    ||  |  ||         |||||||||||||||||||||  ||||||  ||||| | ||  |||||| ||||||||||| ||||||||||||||||| ||    
T  37123712 acccttgaa---------gacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacac 37123622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 14893354 - 14893261
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaaca 136  Q
    |||||||||| ||||| | | ||||||||| |||| |||||||||||||||| |||||||| || |||||| ||||||||||||  ||||||||    
T  14893354 ctgctcaagatgaacagagactggtgaaaccgagagtacaaacaaaagacgccgtatataggcggaacacctgaaaataaacaccctaaaaaca 14893261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 14194331 - 14194215
Alignment:
Q  66 gtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacaccct--atgacaacacccaccaaaataca 163  Q
    ||||||||||||| |||||||||||  ||  ||||||| || |||| |||||||||||||   ||||||||| |   | ||| |||||||||||||||||    
T  14194331 gtgaaactgagaacacaaacaaaaggtgccttatataggcggaacatccgaaaataaacatcctaaaaacactcatgaggaccacacccaccaaaataca 14194232  T
Q  164 tgtcaccacctaaaaca 180  Q
     ||||||||||||||||    
T  14194231 cgtcaccacctaaaaca 14194215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 46358073 - 46358129
Alignment:
Q  77 aatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaa 133  Q
    ||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||    
T  46358073 aatacaaactaaagacgctgtatataggcgaaacacctgaaaataaacaccttaaaa 46358129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 25594308 - 25594396
Alignment:
Q  143 gacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcg 233  Q
    |||||||||||||| |||| |  |||| |||||||||| || ||||||| ||||||||||| | ||||||||||||||| |||||||||||    
T  25594308 gacaacacccaccacaataaacatcactacctaaaacatactccttcac-aaaacgaccactgaaaaaacgatatccaa-accacccatcg 25594396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 14755047 - 14755111
Alignment:
Q  169 ccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcg 233  Q
    |||||||||||| |||||||||| ||| ||||||  |||||||||||||| ||||||| ||||||    
T  14755047 ccacctaaaacagaccccttcacgaaagcgaccattgtaaaaacgatatctaataccatccatcg 14755111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 24324456 - 24324636
Alignment:
Q  44 tgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacaccct--a 141  Q
    ||||||||||||| | | || | ||||| ||||||||||||||||| |||   |||||||| |||||||||||||||||||||| ||||||||||||  |    
T  24324456 tgctcaagacgaatagagatcgatgaaagtgagaatacaaacaaaaaacgtcatatatagctgaaacacccgaaaataaacactctaaaaacacccttga 24324555  T
Q  142 tgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcac-aaaaacgaccaccgtaaaaacgatatccaa 221  Q
     |||||||| |||||||||||| |||||||| ||||||| || ||||||| |||||||||||  |||| ||||||||||||    
T  24324556 ggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatccaa 24324636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 236
Target Start/End: Original strand, 42532909 - 42533111
Alignment:
Q  36 caaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaac 135  Q
    |||||| |||||||||||||||| | |  |||| |||||||||||||| |||||| ||| |||||||| || |||||| | ||||||||||  |||||||    
T  42532909 caaatccctgctcaagacgaacagagaccggtggaactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaaataaacaccctaaaaac 42533008  T
Q  136 accct--atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcg 233  Q
     ||||  |||||||||||||| |||| | | |||| ||||||||||| |||  ||||| ||| | ||||  ||||||| || ||||||||||||||||||    
T  42533009 tcccttgatgacaacacccacaaaaaaatacgtcatcacctaaaacatacctattcacgaaagcaaccattgtaaaaatgaaatccaataccacccatcg 42533108  T
Q  234 tca 236  Q
    |||    
T  42533109 tca 42533111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 1321234 - 1321023
Alignment:
Q  25 tattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaac 124  Q
    ||||||| || || |||||| ||||||||||||  | || | ||||||||||||||||||||   ||||| |||||||| || ||| |||||||||||||    
T  1321234 tattaaacaaccacatctctactcaagacgaacggagatcgatgaaactgagaatacaaacac--gacgccgtatataggcggaactcccgaaaataaac 1321137  T
Q  125 actttaaaaacaccct-atgacaacacccaccaaaatacatgtcaccacctaaaacaaacccctt-cacaaaaacgaccaccgtaaaaacgatatccaat 222  Q
    ||  ||||||| || | | |||| || |||||||||||||  ||||||||||||||| ||||||| ||| ||| | ||||| |||||||||||||| |||    
T  1321136 accctaaaaaccccttgaagacaccatccaccaaaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatctaat 1321037  T
Q  223 accacccatcgtca 236  Q
    ||||| ||||||||    
T  1321036 accactcatcgtca 1321023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 33719407 - 33719194
Alignment:
Q  25 tattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaac 124  Q
    ||||||| || || ||| |||||||||||||||| | || |||||||||||||||||||||||| | ||||| |||||| || ||||  ||||| |||||    
T  33719407 tattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaacggcgctgaatataggcggaaca-tcgaaagtaaac 33719309  T
Q  125 actttaaaaacaccc--tatgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcac-aaaaacgaccaccgtaaaaacgatatccaa 221  Q
    ||  ||||||||| |   | |||||||||||||||||||| | ||||| ||||||||  || ||||||| |||||||||| | ||||||| |||||||||    
T  33719308 accctaaaaacactcatgaggacaacacccaccaaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatgatatccaa 33719209  T
Q  222 taccacccatcgtca 236  Q
     || || ||||||||    
T  33719208 cactactcatcgtca 33719194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 6726058 - 6726147
Alignment:
Q  25 tattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacaccc 114  Q
    ||||||| || || |||||||||||||||||||| | || ||||||||||||||||||||||||| |||| |||||||| || |||||||    
T  6726058 tattaaacaaccagatctctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaaacgccgtatataggcggaacaccc 6726147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 8745583 - 8745477
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    |||| |||||| ||||||| ||||||||| ||  |||||||||||| | | |||||||||||| |||| |||||| |||||| |||||||| || |||||    
T  8745583 aacatcaaatattattaaacaatcaaatccctattcaagacgaacagagactggtgaaactgaaaatagaaacaagagacgccgtatataggcggaacac 8745484  T
Q  113 ccgaaaa 119  Q
    |||||||    
T  8745483 ccgaaaa 8745477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 16828753 - 16828839
Alignment:
Q  39 atctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaaca 125  Q
    ||||||| ||||||| |||| | |  |||||||||||||||||||||||||  ||| |||||||| || ||||||||||||||||||    
T  16828753 atctctgttcaagacaaacaaagaccggtgaaactgagaatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaaca 16828839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 180
Target Start/End: Complemental strand, 16954916 - 16954774
Alignment:
Q  39 atctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacacc 138  Q
    ||||||| ||||||| |||| | |  ||||||||||||| |||||| ||||| | | |||||||| || |||| ||||||||||||||  ||||||||||    
T  16954916 atctctgttcaagacaaacaaagaccggtgaaactgaga-tacaaataaaaggcaccgtatataggcggaacatccgaaaataaacacgctaaaaacacc 16954818  T
Q  139 c--tatgacaacacccaccaaaatacatgtcaccacctaaaaca 180  Q
    |   | || |||| |||| |||||||| ||||||||||||||||    
T  16954817 cctgaagaaaacaaccacaaaaatacacgtcaccacctaaaaca 16954774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 6492890 - 6492946
Alignment:
Q  143 gacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacga 199  Q
    ||||||| |||||||||| || |||||||||||||||| || |||||| ||||||||    
T  6492890 gacaacatccaccaaaattcacgtcaccacctaaaacagactccttcataaaaacga 6492946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 39013643 - 39013583
Alignment:
Q  66 gtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacac 126  Q
    |||||||||||||||||||||| ||||| ||||||||| || || |||  |||||||||||    
T  39013643 gtgaaactgagaatacaaacaagagacgttgtatatagacggaatacctaaaaataaacac 39013583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 6716501 - 6716589
Alignment:
Q  146 aacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    |||||| ||| || |||||| ||||||||||||||  | ||||||| ||||||||||| ||||||||| ||||  | ||||||||| ||||    
T  6716501 aacaccaacccaagtacatgacaccacctaaaaca--ctccttcacgaaaacgaccactgtaaaaacggtatctcacaccacccattgtca 6716589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 28534134 - 28534240
Alignment:
Q  15 cagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacaccc 114  Q
    ||||||||  ||||||| || ||||||| ||||||||||||||| | |  |||||    ||||||||||| ||||| ||| |||||||| || |||||||    
T  28534134 cagcaaattttattaaa-aaccaaatctttgctcaagacgaacagagaccggtgatttagagaatacaaataaaaggcgccgtatataggcggaacaccc 28534232  T
Q  115 gaaaataa 122  Q
    ||||||||    
T  28534233 gaaaataa 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 44755991 - 44755909
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacac 126  Q
    |||||||||||||||  | ||  |||||||| || ||||||||||||| || ||||||||| ||||||| || |||||||||||    
T  44755991 ctgctcaagacgaacgaagatcagtgaaactaagcatacaaacaaaaggcgttgtatataggcgaaaca-cctaaaataaacac 44755909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 43235667 - 43235601
Alignment:
Q  152 caccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatc 218  Q
    |||||||||||| || | ||| ||||||| || | ||||| |||||| |||||||||||||||||||    
T  43235667 caccaaaatacaagttatcacttaaaacagactcattcacgaaaacggccaccgtaaaaacgatatc 43235601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 43235731 - 43235685
Alignment:
Q  46 ctcaagacgaacataaattggtgaaactgagaatacaaacaaaagac 92  Q
    |||||||||||||||||| | ||||||||| |||||||| |||||||    
T  43235731 ctcaagacgaacataaatcgatgaaactgaaaatacaaataaaagac 43235685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 7696415 - 7696209
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    ||||||||||  |||| || || |||||| |||||||||| ||||| | |  | ||||| ||||||||||||||||||   | |||||||| || |||||    
T  7696415 aacagcaaattttattgaacaaccaaatccctgctcaagatgaacagagaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaacac 7696316  T
Q  113 ccgaaaataaacactttaaaaacaccct--atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaa 210  Q
    || ||||||||||| ||||||||||||   | |||||||||||||||||||||  ||||||||||||| |||| ||||||| ||||||||||  ||||||    
T  7696315 ccaaaaataaacaccttaaaaacacccccgaggacaacacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaa 7696216  T
Q  211 acgatat 217  Q
    | |||||    
T  7696215 atgatat 7696209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 34230648 - 34230446
Alignment:
Q  19 aaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaa 118  Q
    ||||| ||||||| || || |||||||||||||||||||| | || |||||| ||| ||||||||||||||||||| |||||||| || ||||||  |||    
T  34230648 aaatattattaaacaaccatatctctgctcaagacgaacagagatcggtgaa-ctgcgaatacaaacaaaagacgccgtatataggcggaacaccaaaaa 34230550  T
Q  119 ataaacactttaaaaacaccc--tatgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgata 216  Q
    |||||||   |||||||||||  ||  |||||| ||||||||||||| ||||||| || ||||| || | | ||| |||||||||||  |||||||||||    
T  34230549 ataaacatcgtaaaaacaccccttagaacaacatccaccaaaatacacgtcaccatct-aaacagactcttccacgaaaacgaccactataaaaacgata 34230451  T
Q  217 tccaa 221  Q
    |||||    
T  34230450 tccaa 34230446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 219
Target Start/End: Complemental strand, 4975172 - 4974990
Alignment:
Q  40 tctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaaca-ctttaaaaacacc 138  Q
    ||||||||||||||||||| | | | |||||||| ||||||||||| |||| ||  |||||||| |  |||||||||||||||||| | | ||||||| |    
T  4975172 tctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatc 4975073  T
Q  139 ct--atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatcc 219  Q
    ||  | || ||||||||||||| ||||   |||||||||||||| ||  |||||| ||||||||||| |||||||||||||||    
T  4975072 cttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4974990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 219
Target Start/End: Complemental strand, 4993080 - 4992898
Alignment:
Q  40 tctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaaca-ctttaaaaacacc 138  Q
    ||||||||||||||||||| | | | |||||||| ||||||||||| |||| ||  |||||||| |  |||||||||||||||||| | | ||||||| |    
T  4993080 tctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatc 4992981  T
Q  139 ct--atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatcc 219  Q
    ||  | || ||||||||||||| ||||   |||||||||||||| ||  |||||| ||||||||||| |||||||||||||||    
T  4992980 cttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 43 - 236
Target Start/End: Original strand, 10173236 - 10173432
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaa-acacc-ct 140  Q
    |||||||||||||||| | || ||||||||  | ||||||||| |||  || ||||||||| || |||||| ||||||||||||  ||||| | ||| ||    
T  10173236 ctgctcaagacgaacagagatcggtgaaacatataatacaaactaaaagcgttgtatataggcggaacacctgaaaataaacaccctaaaagatacctct 10173335  T
Q  141 -atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
     | ||||| ||||| |||||||||||||||  ||||||||| ||  |||||  |||||||| || ||||||||||||| ||| ||||| ||||||||    
T  10173336 gaggacaatacccatcaaaatacatgtcacggcctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtca 10173432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 41113419 - 41113590
Alignment:
Q  65 ggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaaca-ctttaaaaacaccctatgacaacacccaccaaaataca 163  Q
    ||||||||||||||||||||| ||||||  ||||||||| || |||| ||||||||||| | | | |||||||||| ||||   |||||||||||||| |    
T  41113419 ggtgaaactgagaatacaaactaaagacattgtatataggcggaacatccgaaaataaataccctaaaaaacaccc-atgagggcacccaccaaaataaa 41113517  T
Q  164 tgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
     || || |||||||||| || ||||||| |||||||| |  ||| ||||||||||| | | ||| ||||||||    
T  41113518 cgttactacctaaaacagactccttcacgaaaacgactattgtacaaacgatatcccacagcactcatcgtca 41113590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 41086571 - 41086642
Alignment:
Q  165 gtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    |||||||||||||||| ||||||| || ||| |||||||  |||||||||||||||||||||||||||||||    
T  41086571 gtcaccacctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaataccacccatcgtca 41086642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 12343139 - 12343061
Alignment:
Q  143 gacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 221  Q
    ||||||| ||| ||||||||| |||||||||||||||| || ||||||| ||||||||| | |||||||||||||||||    
T  12343139 gacaacatccatcaaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaa 12343061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 25504516 - 25504628
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    ||||||||||  ||||||| ||||| ||| ||||||||||| |||| |||  |||||  | ||||||||||||||||| ||| |||||||| ||||||||    
T  25504516 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 25504614  T
Q  113 ccgaaaataaacac 126  Q
    || |||||||||||    
T  25504615 ccaaaaataaacac 25504628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 37770360 - 37770468
Alignment:
Q  96 gtatatagccgaaacacccgaaaataaacactttaaaaacaccct-atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaa 194  Q
    |||||||| || |||||||||||||||||||  |||||||||| | | || | ||||||||||||| || |||||||||||||||| || ||||||| ||    
T  37770360 gtatataggcggaacacccgaaaataaacaccctaaaaacaccatgaggataccacccaccaaaatccacgtcaccacctaaaacagactccttcacgaa 37770459  T
Q  195 aacgaccac 203  Q
    ||| |||||    
T  37770460 aaccaccac 37770468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 24165839 - 24165916
Alignment:
Q  49 aagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacac 126  Q
    |||||||||| |||||||||||| ||| |||||| || |||||| |||||||||| || |||||||||||| ||||||    
T  24165839 aagacgaacagaaattggtgaaattgataatacagactaaagacactgtatataggcggaacacccgaaaacaaacac 24165916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 15361158 - 15361072
Alignment:
Q  33 aatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaa 119  Q
    ||||||||| |||||||||||||| | | | ||||||||| || ||||||||| |||| ||| |||||||| |||||||||| ||||    
T  15361158 aatcaaatccctgctcaagacgaatagagactggtgaaacagataatacaaacgaaaggcgccgtatatagacgaaacacccaaaaa 15361072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 13337671 - 13337578
Alignment:
Q  46 ctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacaccc 139  Q
    ||||||||||||| | |  |||||||| ||||||||||||||||| ||  ||||||||  | |||||| ||||||||||||  |||||||||||    
T  13337671 ctcaagacgaacagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccctaaaaacaccc 13337578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 41086457 - 41086557
Alignment:
Q  39 atctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacacc 138  Q
    |||||||||||||||||||| | |   ||||||||||| ||||||| ||||  |   |||||||| ||||||||||||||||||| ||  ||||||||||    
T  41086457 atctctgctcaagacgaacagagaccagtgaaactgagcatacaaagaaaaagcatcgtatataggcgaaacacccgaaaataaataccctaaaaacacc 41086556  T
Q  139 c 139  Q
    |    
T  41086557 c 41086557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 33788275 - 33788362
Alignment:
Q  36 caaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaa 123  Q
    |||||||||||| |||||||||| | |  ||||| || |||||||||||| |||| ||| |||||||  || ||||||||||||||||    
T  33788275 caaatctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacacccgaaaataaa 33788362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 33533397 - 33533461
Alignment:
Q  39 atctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatag 103  Q
    |||||||||||||||||||| | | |||||||||| || ||||||||||||| |||  |||||||    
T  33533397 atctctgctcaagacgaacagagactggtgaaactaaggatacaaacaaaaggcgccatatatag 33533461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 1269797 - 1269709
Alignment:
Q  146 aacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    ||||||||  ||||||||  |||||||||||||||||  ||||| |  |||||||| |  |||||||||||||||  ||||||||||||||    
T  1269797 aacacccataaaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatcca--accacccatcgtca 1269709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 37131 - 36951
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaa-caccct- 140  Q
    |||||||||||||||| | |  ||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||  |||||| |||||      
T  37131 ctgctcaagacgaacagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaacatccgaaaataaacaccataaaaaacacccat 37032  T
Q  141 -atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 221  Q
     | ||| ||||||| ||||||||| |||||||||||||||| || |||||||  |||| ||||| |||||||||| ||||||    
T  37031 gaggaccacacccaacaaaatacacgtcaccacctaaaacagactccttcac-gaaaccaccactgtaaaaacgacatccaa 36951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 10248224 - 10248419
Alignment:
Q  45 gctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaa-cactttaaaaa-caccct-- 140  Q
    |||||||||||||  ||||   ||||||||||||||||| | |||| ||  |||||||| || ||||||| |||| ||| ||| ||||||| ||||||      
T  10248224 gctcaagacgaactgaaatcattgaaactgagaatacaacctaaaggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaaacacccttg 10248323  T
Q  141 atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    | |||||||||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||||| |||| | | ||||||||||||    
T  10248324 aggacaacacccgccaaaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtca 10248419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 17656415 - 17656574
Alignment:
Q  65 ggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacaccct--atgacaacacccaccaaaatac 162  Q
    ||||||| |||  ||| ||||||||| ||  |||||||| || ||||||||||||| |||||  ||||||||||||  | |||||||||||||||||| |    
T  17656415 ggtgaaattgaacatataaacaaaaggcgtcgtatatagacggaacacccgaaaattaacaccctaaaaacacccttgaggacaacacccaccaaaattc 17656514  T
Q  163 atgtcaccacctaaaacaaaccccttc-acaaaaacgaccaccgtaaaaacgatatccaa 221  Q
    | ||||||| |||||||| || ||||| | |||||||||||| | |||||||||||||||    
T  17656515 acgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaa 17656574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 43312399 - 43312491
Alignment:
Q  144 acaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    |||||||||| ||||||||||||||||||||||| || || ||| ||||||||||||||| ||||||||||||||| | ||||  ||||||||    
T  43312399 acaacacccatcaaaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgatatcccacaccatacatcgtca 43312491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 22325853 - 22325931
Alignment:
Q  141 atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatcc 219  Q
    ||||| ||||||||||||||| | |||||||  ||||||| || |||| |||||||||||||  |||||||||||||||    
T  22325853 atgacgacacccaccaaaatataggtcaccatataaaacagactccttaacaaaaacgaccattgtaaaaacgatatcc 22325931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 8862308 - 8862418
Alignment:
Q  73 tgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaa-taaacactttaaaaa-caccct--atgacaacacccaccaaaatacatgtca 168  Q
    ||||| |||||||||||| ||| |||||||| || |||| ||||||| |||||||  |||||| |||||   | |||||||||||| |||||||| ||||    
T  8862308 tgagagtacaaacaaaaggcgccgtatatagacggaacatccgaaaaataaacaccataaaaaacaccccgaaggacaacacccacaaaaatacacgtca 8862407  T
Q  169 ccacctaaaac 179  Q
    |||||||||||    
T  8862408 ccacctaaaac 8862418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 236
Target Start/End: Original strand, 12197728 - 12197927
Alignment:
Q  39 atctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaa-acac 137  Q
    |||| ||||||||||||| | | || |||||| | |||||||||||| |||| ||  || ||||| || |||||  ||||||||||||  ||||| ||||    
T  12197728 atctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacac 12197827  T
Q  138 c-ctatg-acaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtc 235  Q
    | ||  | |||||||| || |||||||| ||||||||||| |||| || ||||||  || ||||||||   ||||||||||||||  ||||||| |||||    
T  12197828 ctctggggacaacacc-acaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtc 12197926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 236
Target Start/End: Original strand, 12442156 - 12442355
Alignment:
Q  39 atctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaa-acac 137  Q
    |||| ||||||||||||| | | || |||||| | |||||||||||| |||| ||  || ||||| || |||||  ||||||||||||  ||||| ||||    
T  12442156 atctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacac 12442255  T
Q  138 c-ctatg-acaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtc 235  Q
    | ||  | |||||||| || |||||||| ||||||||||| |||| || ||||||  || ||||||||   ||||||||||||||  ||||||| |||||    
T  12442256 ctctggggacaacacc-acaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtc 12442354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 20701437 - 20701653
Alignment:
Q  25 tattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaac 124  Q
    ||||||| || |||||| || ||||||||||||| | || |||||||||||||||||||||||||| |||||||||||| || |||||| | ||||||||    
T  20701437 tattaaacaaccaaatccct-ctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaggcgctgtatataggcggaacacctggaaataaac 20701535  T
Q  125 actttaaaa-acaccctatgacaacacccaccaa-----aatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatc 218  Q
    ||  ||||| || | | | ||||||||||| |||     || |||  |||||||||| |||| |||| ||||| ||| | ||||| ||||||||||||||    
T  20701536 acactaaaacacccacgaggacaacacccatcaaaccctaaaacacttcaccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatc 20701635  T
Q  219 caataccacccatcgtca 236  Q
    |||||| |||||||||||    
T  20701636 caatactacccatcgtca 20701653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 180
Target Start/End: Complemental strand, 6860457 - 6860317
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagc--cgaaacacccgaaaataaacactttaaaaacaccct 140  Q
    |||||||||| ||| ||| || ||||||||| |||||||||||||||||||| ||||||||   || ||||||| |||||||||||  |||||||||| |    
T  6860457 ctgctcaagatgaatatagatcggtgaaactaagaatacaaacaaaagacgccgtatataggggcggaacacccaaaaataaacaccctaaaaacacc-t 6860359  T
Q  141 atg---acaacacccaccaaaatacatgtcaccacctaaaaca 180  Q
    |||   ||||| ||||| |||||||| |||| |||||||||||    
T  6860358 atgcggacaac-cccacaaaaatacacgtcatcacctaaaaca 6860317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 3880251 - 3880363
Alignment:
Q  25 tattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaac 124  Q
    ||||||| ||||| ||| |||||||||||||||| | |  ||||||||||| ||||||||||||||   | |||||||  || ||||||  |||||||||    
T  3880251 tattaaacaatcagatccctgctcaagacgaacagagaccggtgaaactgaaaatacaaacaaaaggttccgtatataagcggaacaccaaaaaataaac 3880350  T
Q  125 actttaaaaacac 137  Q
    ||  |||||||||    
T  3880351 accctaaaaacac 3880363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 16180486 - 16180572
Alignment:
Q  15 cagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatata 102  Q
    ||||||||  ||||||| ||||| |||||||||||||||||||| | || |||||||| || ||||||||  |||||| | |||||||    
T  16180486 cagcaaattttattaaa-aatcagatctctgctcaagacgaacaaagatcggtgaaacagataatacaaatgaaagacaccgtatata 16180572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 5607654 - 5607728
Alignment:
Q  65 ggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacaccc 139  Q
    |||| ||||||||| |||||  ||||||| | ||||||| ||||||| | |||||||||||  ||||||||||||    
T  5607654 ggtgcaactgagaacacaaatgaaagacgttatatatagacgaaacatctgaaaataaacatcttaaaaacaccc 5607728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 13098346 - 13098400
Alignment:
Q  142 tgacaacacccaccaaaatacatgtcaccacct-aaaacaaaccccttcacaaaa 195  Q
    |||||||||||||||||||| |  ||||||||| |||||| ||||||||||||||    
T  13098346 tgacaacacccaccaaaataaacatcaccacctaaaaacagaccccttcacaaaa 13098400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 15120362 - 15120415
Alignment:
Q  143 gacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaa 196  Q
    ||||||| |||||||||||||  ||||||||||||||| || | ||||||||||    
T  15120362 gacaacatccaccaaaatacacatcaccacctaaaacagactcattcacaaaaa 15120415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 16180674 - 16180722
Alignment:
Q  142 tgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttca 190  Q
    |||||||| ||||||||||| |  ||||||||||||||| |||||||||    
T  16180674 tgacaacatccaccaaaataaacatcaccacctaaaacagaccccttca 16180722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 16832680 - 16832872
Alignment:
Q  46 ctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacac-cct-atg 143  Q
    |||||||| |||| |||| |||||||||||||||||||||||||| ||||| |||||| || ||||||  |||||||||||  ||||||| | ||| | |    
T  16832680 ctcaagacaaacagaaatcggtgaaactgagaatacaaacaaaaggcgctgcatataggcggaacaccaaaaaataaacaccctaaaaactctcctgagg 16832779  T
Q  144 acaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcac-aaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    |||||||||||| ||||| | |||||||||||||||| |  ||| ||| |||||||||| | ||||||| ||||||||| ||||||| ||||||    
T  16832780 acaacacccacc-aaataaacgtcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacaccacccgtcgtca 16832872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 38636913 - 38637084
Alignment:
Q  65 ggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaa---aacaccctatgacaacacccaccaaaata 161  Q
    ||||||| ||||| ||||||||| || ||| |||| ||| || |||||| |||||||||||| |||||   ||| ||| | |||||||||||| ||||||    
T  38636913 ggtgaaaatgagactacaaacaagaggcgccgtat-taggcggaacacctgaaaataaacaccttaaataaaacccccgaggacaacacccacgaaaata 38637011  T
Q  162 catgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    |||||||||||||||||||||| ||||||| ||||| ||| | ||||||| ||||||||  ||||||||||||||    
T  38637012 catgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatcca--accacccatcgtca 38637084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 236
Target Start/End: Original strand, 41117621 - 41117818
Alignment:
Q  39 atctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaa-aacac 137  Q
    |||||||||||||||||||| | |  ||||||| ||||| ||||||||| || |   |||||||| || |||||||||||||||||||  |||| |||||    
T  41117621 atctctgctcaagacgaacagagacaggtgaaattgagactacaaacaagaggcatcgtatataggcggaacacccgaaaataaacaccctaaataacac 41117720  T
Q  138 cct-atgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    | | | |||||||||||||||||||||| |||||||||| |||| || | | ||| ||||| |||   ||||||||||||||||  ||||||||||||||    
T  41117721 catgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaaaacgatatcca--accacccatcgtca 41117818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 48098730 - 48098647
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacac 126  Q
    |||||||||||||||  | || ||||||||||| |||||||||||||||||| |||||||| || |||||||||||||||||||    
T  48098730 ctgctcaagacgaacggagatcggtgaaactgaaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacac 48098647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 49747950 - 49747757
Alignment:
Q  45 gctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaa-cacc-ct-a 141  Q
    |||||||||||| | | | |||||||| | || |||||||||||||||   |||||||  || |||| || |||||||||||  |||||| |||| || |    
T  49747950 gctcaagacgaatagagactggtgaaatttagcatacaaacaaaagacatcgtatatatgcggaacatccaaaaataaacaccataaaaaacacctctga 49747851  T
Q  142 tgacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
     |||||||||||||||||| ||||||||||||||||||| || | ||||| ||||||||||  |||||||||| |||||| ||| ||||| ||||    
T  49747850 ggacaacacccaccaaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacaccgcccattgtca 49747757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 42719598 - 42719497
Alignment:
Q  25 tattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaac 124  Q
    ||||||| ||||||||| |||||||||||||| | | |  |||||||||||||||||||||||||||||| |||||||  || || ||| ||||||||||    
T  42719598 tattaaacaatcaaatccctgctcaagacgaatagagaccggtgaaactgagaatacaaacaaaagacgccgtatataagcggaaaacctgaaaataaac 42719499  T
Q  125 ac 126  Q
    ||    
T  42719498 ac 42719497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 28967300 - 28967216
Alignment:
Q  42 tctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacac 126  Q
    ||||||||||||||||| | || |||||||| || ||||||||| |||| |||||||||||| || |||||| ||||||||||||    
T  28967300 tctgctcaagacgaacagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacac 28967216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 25753495 - 25753417
Alignment:
Q  143 gacaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 221  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||||| |||| | |||| |||||| || |||||||    
T  25753495 gacaacacccaccaaaatacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaa 25753417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 35947934 - 35948044
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacac 112  Q
    |||| |||||| ||||||| || || |||  |||| |||||||||||| | | ||||| |||||||||||||||||||||||  ||||||  || |||||    
T  35947934 aacatcaaatattattaaacaaccagatccttgcttaagacgaacatatactagtgaatctgagaatacaaacaaaagacgccatatataagcggaacac 35948033  T
Q  113 ccgaaaataaa 123  Q
    |||||||||||    
T  35948034 ccgaaaataaa 35948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 22810925 - 22811011
Alignment:
Q  148 cacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    |||||||||||||||| |||||| ||||||||| ||  |||||| ||| ||||||| |||||||||||||||  ||||| |||||||||    
T  22810925 cacccaccaaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcc--taccatccatcgtca 22811011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 19311128 - 19311203
Alignment:
Q  146 aacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 221  Q
    |||||||||||||||||| |||||||||  ||||| |  ||||||| ||||||| ||| |||||||||||||||||    
T  19311128 aacacccaccaaaatacacgtcaccaccataaacagattccttcacgaaaacgagcactgtaaaaacgatatccaa 19311203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 48098651 - 48098580
Alignment:
Q  146 aacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatcca 220  Q
    ||||||||||||| |||| ||||||||||||||||  | | ||||||||||||||||| ||||||||||||||||    
T  48098651 aacacccaccaaa-tacacgtcaccacctaaaaca--ctctttcacaaaaacgaccactgtaaaaacgatatcca 48098580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 9262897 - 9262807
Alignment:
Q  13 aacagcaaatactattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatag 103  Q
    ||||||||||  ||||||| || |||||| | |||||||||||||| | |  | |||||||||||||||||||||||| ||| ||||||||    
T  9262897 aacagcaaattttattaaacaaccaaatccccgctcaagacgaacaaagaccgatgaaactgagaatacaaacaaaaggcgccgtatatag 9262807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 39420803 - 39420888
Alignment:
Q  151 ccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    ||||||||||||| ||||||| |||||||  || ||| ||| | ||| ||||||||| ||||||||||||| ||||||| ||||||    
T  39420803 ccaccaaaatacacgtcaccatctaaaactgactcctacacgagaacaaccaccgtataaacgatatccaacaccacccgtcgtca 39420888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 178
Target Start/End: Original strand, 2061471 - 2061627
Alignment:
Q  25 tattaaataatcaaatctctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaac 124  Q
    ||||||| | ||| ||| |||| ||||||||||| ||| || ||||||||||||||||||||| ||    ||||||||| || |||| | || |||||||    
T  2061471 tattaaacagtcagatccctgcccaagacgaacagaaactgatgaaactgagaatacaaacaagaggtcttgtatataggcggaacatctgataataaac 2061570  T
Q  125 actttaaaa---acaccctatgacaacacccaccaaaatacatgtcaccacctaaaa 178  Q
    ||  |||||   || ||  | | ||||||||| ||||||||| ||||||||||||||    
T  2061571 acactaaaaaatacccctgagggcaacacccatcaaaatacaagtcaccacctaaaa 2061627  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 53823185 - 53823266
Alignment:
Q  146 aacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccaccca 230  Q
    |||||||||||||||||| |||| ||||   |||| || |||||||||||| | ||||| |||||||||||||| | ||||||||    
T  53823185 aacacccaccaaaatacacgtcatcacc---aacagactccttcacaaaaatgtccaccataaaaacgatatcccacaccaccca 53823266  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 19814978 - 19815064
Alignment:
Q  143 gacaacacccaccaaaatacatgtcacca---cctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaatacca 226  Q
    ||||||||||||||||| ||| |||||||   ||| ||||| ||  |||||| |||| |||||| ||||||| ||||||||||||||    
T  19814978 gacaacacccaccaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaatacca 19815064  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 25754272 - 25754204
Alignment:
Q  70 aactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacacc 138  Q
    ||||||||||||||| ||||  ||| |||||||| || |||| | ||||||||||||  ||||||||||    
T  25754272 aactgagaatacaaataaaaagcgccgtatatagacggaacatctgaaaataaacaccataaaaacacc 25754204  T

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Target: scaffold0200 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 19687 - 19622
Alignment:
Q  156 aaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaa 221  Q
    ||||||||  |||||||||||||||||| ||||| ||||||||||| |  ||||||||||||||||    
T  19687 aaaatacacatcaccacctaaaacaaactccttctcaaaaacgacctctataaaaacgatatccaa 19622  T

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Target: scaffold0063 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 58552 - 58357
Alignment:
Q  43 ctgctcaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtatatagccgaaacacccgaaaataaacactttaaaaacaccctat 142  Q
    |||||||||||||| | | |  |||||||| || |||| ||||||||| ||| ||||||||    ||||||| |||||||| ||  ||||||||||| ||    
T  58552 ctgctcaagacgaaaagagaccggtgaaacagataatagaaacaaaaggcgccgtatataggtagaacacccaaaaataaataccctaaaaacaccc-at 58454  T
Q  143 gacaacacc--ca-ccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    || ||||||  || ||||| ||||  |||||||| |||||| || ||||||| ||||||||||  ||||||  ||||||||| || |||| ||||||    
T  58453 gagaacaccatcagccaaagtacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtca 58357  T

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Target: scaffold1384 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 1416 - 1508
Alignment:
Q  144 acaacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    |||| |||||| |||||||| |||||||||||||||  || ||| ||| | ||| ||||| ||||||||||||||||| ||||| | ||||||    
T  1416 acaaaacccacaaaaatacacgtcaccacctaaaactgactcctacacgagaacaaccactgtaaaaacgatatccaacaccacacgtcgtca 1508  T

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Target: scaffold0119 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 41905 - 41993
Alignment:
Q  146 aacacccaccaaaatacatgtcaccacctaaaacaaaccccttcacaaaaacgaccaccgtaaaaacgatatccaataccacccatcgtca 236  Q
    ||||||||  ||||||||  |||||||||||||||||  ||||| |  |||||||| |  |||||||||||||||  ||||||||||||||    
T  41905 aacacccataaaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatcca--accacccatcgtca 41993  T

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Target: scaffold0499 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 6864 - 6810
Alignment:
Q  142 tgacaacacccaccaaaatacatgtcaccacct-aaaacaaaccccttcacaaaa 195  Q
    |||||||||||||||||||| |  ||||||||| |||||| ||||||||||||||    
T  6864 tgacaacacccaccaaaataaacatcaccacctaaaaacagaccccttcacaaaa 6810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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