View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_38 (Length: 356)
Name: NF1720_low_38
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 25626269 - 25626596
Alignment:
| Q |
12 |
agagagacaaaaactatgagctgtagcagccagtggtaatgaccttcaggtccaacatgatcagtggaatgaaaatgaagtaagaaaagctcttgactga |
111 |
Q |
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| T |
25626269 |
agagagacaaaaactatgagctgtagcagccagtggtaatgaccttcaggtccaacatgatcagtggaatgaaaatgaagtaagaaaagctcttgactga |
25626368 |
T |
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| Q |
112 |
aaactgaggatacaagtatgccaacaaatccagagaagagttcaagtgaatcggttaattcggttaagagtgaaaaaccggcaaataaagcaaggtgtat |
211 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25626369 |
aaactgaggatacaagtatggcaacaaatccagagaagagttcaagcgaatcggttaattcggttaagagtgaaaaaccggcaaataaagcaaggtgtat |
25626468 |
T |
|
| Q |
212 |
gaacatagttgcatgttcaaagttatcaagcttaaaagcatagtgaaaatgaggaaaatctagaatttgcatgagaattgctaggattgaaaaggataaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25626469 |
gaacatagttgcatgttcaaagttatcaagcttaaaagcatagtgaaaatgaggaaaatctagaatttgcatgagaattgctaggattgaaaaggataaa |
25626568 |
T |
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| Q |
312 |
attgaaacaagttccaagtgtttgaatt |
339 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25626569 |
attgaaacaagttccaagtgtttgaatt |
25626596 |
T |
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