View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_41 (Length: 353)
Name: NF1720_low_41
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 164 - 328
Target Start/End: Complemental strand, 28395305 - 28395141
Alignment:
| Q |
164 |
atcaattcttttgcatcaacatgaaccaagtttattaaaaataaatcaaaatgttaaataaagaaatggaacttgattaaccgaactggacccaataaaa |
263 |
Q |
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| T |
28395305 |
atcaattcttttgcatcaacatgaaccaagtttattaaaaataaatcaaaatgttaaataaagaaatggaacttgattaaccgaactggacccaataaaa |
28395206 |
T |
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| Q |
264 |
ataagcccaattgaataaggagtacatgctaaacaaaaataaacccaatataaacacaaacataa |
328 |
Q |
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| T |
28395205 |
ataagcccaattgaataaggagtacatgctaaacaaaaatgaacccaatataaacacaaacataa |
28395141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 28395470 - 28395331
Alignment:
| Q |
1 |
aacttaatttactactaacataattaaaatttgcataaacaaatacattcaacaactttgattaaatattttctttttaagtcagctagcaaacaatatg |
100 |
Q |
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| T |
28395470 |
aacttaatttactactaacataattaaaatttgcataaacaaatacattcaacaactttgattaaatattttctttttaagtcagctagcaaacaatatg |
28395371 |
T |
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| Q |
101 |
taacaaaac-aaataatgggtatattctcttgtatcaatg |
139 |
Q |
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| T |
28395370 |
taacaaaacaaaataatgggtatattctcttgtatcaatg |
28395331 |
T |
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