View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_42 (Length: 351)
Name: NF1720_low_42
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 29647987 - 29648192
Alignment:
| Q |
1 |
atgatgattttgtttacgagttttattgcgaatgtcgtttcataggtagcaaaggaatgaagaggaagctcacagacatgaatttttataagtttcatta |
100 |
Q |
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| T |
29647987 |
atgatgattttgtttacgagttttattgcgattgtcgtttcataggtagcaaaggaatgaagaggaagctcacagacatgaatttttataagtttcatta |
29648086 |
T |
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| Q |
101 |
acttttgttcttagatttaagtgctattctgaaaggcatggatcatttgaagagaagcactactgttgatgttttgaaggaattttgtt-gagacatttg |
199 |
Q |
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| T |
29648087 |
acttttgttcttagatttaagtgctattctaaaaggcatggatcatttgaagagaatcactactgttgatgttttgaaggaattttgttggagacatttg |
29648186 |
T |
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| Q |
200 |
agaatc |
205 |
Q |
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|||||| |
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| T |
29648187 |
agaatc |
29648192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 29639966 - 29640170
Alignment:
| Q |
1 |
atgatgattttgtttacgagttttattgcgaatgtcgtttcataggtagcaaaggaatgaagaggaagctcacagacatgaatttttataagtttcatta |
100 |
Q |
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|||||||||||||||| ||||||||||||||||| ||| ||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
29639966 |
atgatgattttgtttatgagttttattgcgaatgccgtgtcaaaggtagcaaacgaatgaagaggaagttcacacacatgaatttttataagtttcatta |
29640065 |
T |
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| Q |
101 |
acttttgttcttagatttaagtgctattctgaaaggcatggatcatttgaagagaagcactactgtt---gatgttttgaaggaattttgtt-gagacat |
196 |
Q |
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| T |
29640066 |
aatgttgttcttag-tttaagtgctattctgataggcatggatcaattgaagagaagcactgttgttggggatgttttgaaggaattttgttggagatat |
29640164 |
T |
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| Q |
197 |
ttgaga |
202 |
Q |
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|||||| |
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| T |
29640165 |
ttgaga |
29640170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 29648282 - 29648330
Alignment:
| Q |
295 |
ctgaaacattttgatttggagattgtttcaattttgaaagcttcatctc |
343 |
Q |
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| T |
29648282 |
ctgaaacattttgatttggagattgtttcaattttgaaagcctcatctc |
29648330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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