View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_43 (Length: 346)
Name: NF1720_low_43
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 152 - 330
Target Start/End: Complemental strand, 42591030 - 42590852
Alignment:
| Q |
152 |
gttaaatgtgtgaactatgaactatgaagttaaaaggggataactgaaaaagtaacaattatgtaatgctacttttcatgttctagtgtattttggtctt |
251 |
Q |
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| T |
42591030 |
gttaaatgtgtgaactatgaactatgaagttaaaaggggataactgaaaaagtaacaattatgtaatgctacttttcatgttctagtgtattttggtctt |
42590931 |
T |
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| Q |
252 |
ggaaattctgttactgattttaggttgtgctgtgaagaaaattgattttgattgaattaatttggtcgaaagtgggttg |
330 |
Q |
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| T |
42590930 |
ggaaattctgttactgattttaggttgtgctatgaagaaaattgattttgattgaattaatttggtcgaaagtgggttg |
42590852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 42591178 - 42591058
Alignment:
| Q |
6 |
agaagcataggtaaggtgtgtttgtctgtatcggctaaagggttgtcaataactgggattgatgatcggagatattggaaccatgttcccactgaagaat |
105 |
Q |
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| T |
42591178 |
agaagcatgggtaaggtgtgtttgtctgtatcggctaaagggttgtcaataactgggattgatgatcggagatattggaaccatgttcccactgaagaat |
42591079 |
T |
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| Q |
106 |
caaggtaagatgtattcttca |
126 |
Q |
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| T |
42591078 |
caaggtaagatgtattcttca |
42591058 |
T |
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