View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720_low_44 (Length: 345)

Name: NF1720_low_44
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720_low_44
NF1720_low_44
[»] chr3 (1 HSPs)
chr3 (11-328)||(7637183-7637523)
[»] chr8 (4 HSPs)
chr8 (193-296)||(19933887-19933990)
chr8 (181-260)||(12798539-12798618)
chr8 (193-307)||(24490657-24490770)
chr8 (196-297)||(26116038-26116139)
[»] chr6 (2 HSPs)
chr6 (196-297)||(1655501-1655602)
chr6 (196-297)||(32967926-32968027)
[»] chr4 (1 HSPs)
chr4 (193-297)||(30932461-30932565)
[»] scaffold0207 (1 HSPs)
scaffold0207 (198-297)||(25192-25291)
[»] chr7 (2 HSPs)
chr7 (196-297)||(8622111-8622212)
chr7 (196-297)||(17956168-17956269)
[»] chr5 (1 HSPs)
chr5 (196-297)||(5295209-5295310)
[»] chr1 (1 HSPs)
chr1 (193-297)||(4172010-4172114)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 7637183 - 7637523
Alignment:
Q  11 agcaaaggacaacaaacaaatgcgctgtcaatagtagaagcagaatacatatcatatacaaattgtagcacacaacttatgtggatgaaacgtcggcttt 110  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  7637183 agcaaaggacaacaaacaaatgtgctgtcaatagtagaagcataatacatatcatatacaaattgtagcacacaacttatatggatgaaatgtcggcttt 7637282  T
Q  111 aata------------------ataccacataaagtagtatttcaattttatgtgataatactccagctatttatctatttaaaaactcactctagaaca 192  Q
    ||||                  |||||||  ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  7637283 aataataccacagaaaaaaataataccactgaaagtagtatttcaattttatgtgataatactccaactatttgtctatttaaaaactcactctaaaaca 7637382  T
Q  193 aaacatattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatat-- 290  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||      
T  7637383 aaacatattgaaactaaacatcattttataagaggtcgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaatgagctaatatat 7637482  T
Q  291 ---atttacacaaacccttaggtgaagatgaattcaatttt 328  Q
       ||||||||||||||||||||||||||||||||||||||    
T  7637483 ttaatttacacaaacccttaggtgaagatgaattcaatttt 7637523  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 19933990 - 19933887
Alignment:
Q  193 aaacatattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatatat 292  Q
    ||||||||||||| |||||| |||||||| |||| || |||||| ||||| ||| | |||||| |||||||| |||  || |||||||  ||| ||||||    
T  19933990 aaacatattgaaattaaacaccattttatcagagattatgttcaaaaaggaatattagatatacaattcattgatactgaacatcaatgggctgatatat 19933891  T
Q  293 ttac 296  Q
    ||||    
T  19933890 ttac 19933887  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 12798618 - 12798539
Alignment:
Q  181 cactctagaacaaaacatattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaatt 260  Q
    ||||| ||| ||||||| ||||||| ||||| ||||||||| ||||  | |||| ||||||| || ||||||||||||||    
T  12798618 cactcaagagcaaaacacattgaaattaaacgtcattttattagagactatgttgagaaaggtattcttgatataaaatt 12798539  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 307
Target Start/End: Original strand, 24490657 - 24490770
Alignment:
Q  193 aaacatattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatatat 292  Q
    ||||| ||||||| ||||||||||||||||||||  | |||||| |||||  |  | |||||  |||||||| |||| || |||||||  ||| ||||||    
T  24490657 aaacacattgaaattaaacatcattttataagagactatgttcaaaaaggtgttttggatattcaattcattgatattgaacatcaatgggctgatatat 24490756  T
Q  293 ttacacaaaccctta 307  Q
    ||||| |||||||||    
T  24490757 ttaca-aaaccctta 24490770  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 26116139 - 26116038
Alignment:
Q  196 catattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatatattta 295  Q
    ||||||||||  ||||| |||||||| ||||  | |||||| ||||||||  | |||||| |||||||| |||  || ||||||| |||| |||||||||    
T  26116139 catattgaaatcaaacaccattttatcagagactatgttcaaaaagggattttagatatacaattcattgatactgaacatcaatgagctgatatattta 26116040  T
Q  296 ca 297  Q
    ||    
T  26116039 ca 26116038  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 1655602 - 1655501
Alignment:
Q  196 catattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatatattta 295  Q
    |||||||||| |||||| |||||||| |||| || |||||| |||||  |  | |||||| |||||||| ||||||| |||||||  ||| |||||||||    
T  1655602 catattgaaattaaacaccattttatcagagattatgttcaaaaaggagttttagatatacaattcattgatatagagcatcaatgggctgatatattta 1655503  T
Q  296 ca 297  Q
    ||    
T  1655502 ca 1655501  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 297
Target Start/End: Original strand, 32967926 - 32968027
Alignment:
Q  196 catattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatatattta 295  Q
    ||||||||||  ||||| |||||||| ||||  | |||||| |||||||| || |||||| |||||||| |||  || |||||||  ||| |||||||||    
T  32967926 catattgaaatcaaacaccattttatcagagactatgttcaaaaagggattctagatatacaattcattgatactgaacatcaatgggctgatatattta 32968025  T
Q  296 ca 297  Q
    ||    
T  32968026 ca 32968027  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 30932461 - 30932565
Alignment:
Q  193 aaacatattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatatat 292  Q
    |||||||||||||  ||||| |||||||| ||||  | |||||| ||||||||  | |||||| |||||||| |||| || |||||||  ||| ||||||    
T  30932461 aaacatattgaaatcaaacaccattttatcagagactatgttcaaaaagggattttagatatacaattcattgatattgaacatcaatgggctgatatat 30932560  T
Q  293 ttaca 297  Q
    |||||    
T  30932561 ttaca 30932565  T

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Target: scaffold0207 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 25291 - 25192
Alignment:
Q  198 tattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatatatttaca 297  Q
    ||||||||  |||||||||||||| |||| || |||||| |||||  |  | |||||| |||||||| ||| ||| |||||||| ||| |||||||||||    
T  25291 tattgaaatcaaacatcattttatcagagattatgttcaaaaaggagttttagatatacaattcattgatacagagcatcaatttgctgatatatttaca 25192  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 8622212 - 8622111
Alignment:
Q  196 catattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatatattta 295  Q
    ||||||||||  ||||| |||||||| ||||  | |||||| ||||||||  | |||||| |||||||| |||| || |||||||  ||| |||||||||    
T  8622212 catattgaaatcaaacaccattttatcagagactatgttcaaaaagggattttagatatacaattcattgatattgaacatcaatgggctgatatattta 8622113  T
Q  296 ca 297  Q
    ||    
T  8622112 ca 8622111  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 297
Target Start/End: Original strand, 17956168 - 17956269
Alignment:
Q  196 catattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatatattta 295  Q
    ||||||||||  ||||| |||||||| ||||  | |||||| ||||||||  | |||||| ||||||||||||  || |||||||  ||| |||||||||    
T  17956168 catattgaaatcaaacaccattttatcagagactatgttcaaaaagggattttagatatacaattcattaatactgaacatcaatgggctgatatattta 17956267  T
Q  296 ca 297  Q
    ||    
T  17956268 ca 17956269  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 5295310 - 5295209
Alignment:
Q  196 catattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatatattta 295  Q
    ||||||||||  ||||| |||||||| |||| || |||||| ||||||||  | |||||| |||||||| |||  || |||||||  ||| |||||||||    
T  5295310 catattgaaatcaaacaccattttatcagagattatgttcaaaaagggattttagatatacaattcattgatactgaacatcaatgggctgatatattta 5295211  T
Q  296 ca 297  Q
    ||    
T  5295210 ca 5295209  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 4172114 - 4172010
Alignment:
Q  193 aaacatattgaaactaaacatcattttataagaggttgtgttcagaaagggatacttgatataaaattcattaatatagaccatcaattagctaatatat 292  Q
    |||||||||||||  ||||| |||||||| ||||  | |||||| ||||||||  | |||||| |||||||| |||  || |||||||  ||| ||||||    
T  4172114 aaacatattgaaatcaaacaccattttatcagagactatgttcaaaaagggattttagatatacaattcattgatactgaacatcaatgggctgatatat 4172015  T
Q  293 ttaca 297  Q
    |||||    
T  4172014 ttaca 4172010  T

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