View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_46 (Length: 344)
Name: NF1720_low_46
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 9152057 - 9152383
Alignment:
| Q |
1 |
ctaagtaactgtcaattcagtgacagtccacgatcatgacagttactttgttgagctagtctcaacagatcgtgtcgtaggttgacacacttccaaaatt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9152057 |
ctaagtaactgtcaattcactgacagtccacgatcatgacagttactttgttgagctagtctcaacagatcgtgtcgtaggttgacacacttccaaaatt |
9152156 |
T |
|
| Q |
101 |
tgttctacgtcagctgatattccgtaaaatttaagtcttatattataacacgtgtttgaaagacccattttcatacaaacgtgtctccaaataaacgtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9152157 |
tgttctacgtcagctgatattccgtaaaatttaagtcttatattataacacgtgtttgaaagatccattttcatacaaacgtgtctccaaataaacgtgt |
9152256 |
T |
|
| Q |
201 |
cttgtaagtcatcttctccgtcgatatccaaatctttgttgattcctcctgtagtttattcggaaagttggactttctcttgactctttttcagctacga |
300 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9152257 |
cttgtaagtcatcttctccgtcgatatccaaatcctcgttgattcctcctgtagtttattcggaaagttggactttctcttgactctttgtcagctacga |
9152356 |
T |
|
| Q |
301 |
tcttgtggtttctttgtaaagttggac |
327 |
Q |
| |
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|||||||||||||| |||||||||||| |
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| T |
9152357 |
tcttgtggtttcttcgtaaagttggac |
9152383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 9176557 - 9176231
Alignment:
| Q |
1 |
ctaagtaactgtcaattcagtgacagtccacgatcatgacagttactttgttgagctagtctcaacagatcgtgtcgtaggttgacacacttccaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9176557 |
ctaagtaactgtcaattcagtgacagtccacgatcatgacagttactttgttgagctagtctcaacagatcgtgtcgtaggttgacacacttccaaaatt |
9176458 |
T |
|
| Q |
101 |
tgttctacgtcagctgatattccgtaaaatttaagtcttatattataacacgtgtttgaaagacccattttcatacaaacgtgtctccaaataaacgtgt |
200 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9176457 |
tgttctacatcagatgatattccgtaaaatttaagtcttatattataacacgtgtttgaaagatccattttcatacaaacgtgtctccaaataaacgtgt |
9176358 |
T |
|
| Q |
201 |
cttgtaagtcatcttctccgtcgatatccaaatctttgttgattcctcctgtagtttattcggaaagttggactttctcttgactctttttcagctacga |
300 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9176357 |
cttgtaagtcatcttctccgtcgatatccaaatcctcgttgattcctcctgtagtttattcggaaagttggactttctcttgactctttgtcagctacga |
9176258 |
T |
|
| Q |
301 |
tcttgtggtttctttgtaaagttggac |
327 |
Q |
| |
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|||||||||||||| |||||||||||| |
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| T |
9176257 |
tcttgtggtttcttcgtaaagttggac |
9176231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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