View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_48 (Length: 338)
Name: NF1720_low_48
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 51035815 - 51036125
Alignment:
| Q |
19 |
actgtcaactcgagcctgccacttatcattgtctatggcccatcgcaatcacagcatagcgagtatcagcagttgcagcaaaccatgcatgcattcctga |
118 |
Q |
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| T |
51035815 |
actgtcaactcgagcctgccacttatcattgtctatggcccatcgcaatcacagcatagcgagtatcagcagttgcagcaaaccatgcatgcattcctga |
51035914 |
T |
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| Q |
119 |
atcaaagaatcatgtaagtgatgagtcacaacaaatcttgtaactgacatattcctctcaagtgccaacttctcttaaccaacctccaagggatattcca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51035915 |
atcaaagaatcatgtaagtgatgagtcacaacaaatcttgtaactgacatattcctctcaagtgtcaacttctcttaaccaacctccaagggatattcca |
51036014 |
T |
|
| Q |
219 |
gtaattcctatcctagagtagaggggtctgcatcttctctctgtgttagataatctgccaatttaatcaagtcccatacctgccaggtcaaggaataata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51036015 |
gtaattcctatcctagagtagaggggtctgcatcttctctctgtgttagataatctgccaatttaatcaagtcccatacctgccaggtcaaggaataata |
51036114 |
T |
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| Q |
319 |
cacaggttctg |
329 |
Q |
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||||| ||||| |
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| T |
51036115 |
cacagtttctg |
51036125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 63 - 318
Target Start/End: Original strand, 51043787 - 51044030
Alignment:
| Q |
63 |
gcaatcacagcatagcgagtatcagcagttgcagcaaaccatgcatgcattcctgaatcaaagaatcatgtaagtgatgagtcacaacaaatcttgtaac |
162 |
Q |
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|||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| | ||| | |
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| T |
51043787 |
gcaaccacagcatagcgagtatcaacagctgcagcaaaccatgcatgcattcctgaatcaaggaataatgtaagtgatgtatcacaacaaacttggtatc |
51043886 |
T |
|
| Q |
163 |
tgacatattcctctcaagtgccaacttctcttaaccaacctccaagggatattccagtaattcctatcctagagtagaggggtctgcatcttctctctgt |
262 |
Q |
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||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| | |
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| T |
51043887 |
caacatattcctctcaa-------cttctctcaaccaacctccaagtgatattccagtaattcctatcctaga-----ggggtctatatcttctctctct |
51043974 |
T |
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| Q |
263 |
gttagataatctgccaatttaatcaagtcccatacctgccaggtcaaggaataata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
51043975 |
gttagataatctgccaatttaatcaagtcccatacctgccagatcaaggaacaata |
51044030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 51043628 - 51043677
Alignment:
| Q |
19 |
actgtcaactcgagcctgccacttatcattgtctatggcccatcgcaatc |
68 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
51043628 |
actgtcaactcgagcctgccacttatcgttgtctatggcccatcgaaatc |
51043677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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