View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720_low_49 (Length: 334)
Name: NF1720_low_49
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 27887852 - 27888158
Alignment:
| Q |
10 |
aagaaaataggtatgtgagtcttcaacgatcaccaataannnnnnnngaaggaaatgatcatcaataatgaagttcaacatgtaatttttgtt-gtaaaa |
108 |
Q |
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| T |
27887852 |
aagaaaataggtatgtgagtcttcaacgatcaccaataattttttttgaaggaaacgatcatcgataatgaagttcaacatgtaatttttgtttgtaaaa |
27887951 |
T |
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| Q |
109 |
agtctgcgaattacgctcctttcaaatgatccaaatactagccaactaaatcacttgaaagcaatgacgaatgttcctcctaaacaaatgagaaccactg |
208 |
Q |
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| T |
27887952 |
agtctgcgaattacgctcctttcaaatgatccaaatactagccaactaaatcacttgaaagcaatgacgaatgttcctcctaaacaaatgagaaccactg |
27888051 |
T |
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| Q |
209 |
aactgcataacatgcacgtagacattaaacgaaagatcatttaaaatccccaactacttcaaaatggaagaccaaaagctaccaaaaatatcacatttca |
308 |
Q |
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| T |
27888052 |
aactgcataacatgcacgtagacatcaaacgaaagatcatttaaaatctccaactacttcaaaatggaagaccaaaagctaccaaaaatatcacatttca |
27888151 |
T |
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| Q |
309 |
agaatat |
315 |
Q |
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||||||| |
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| T |
27888152 |
agaatat |
27888158 |
T |
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Back To:
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 53665576 - 53665654
Alignment:
| Q |
128 |
tttcaaatgatccaaatactagccaactaaatcacttgaaagcaatgacgaatgttcctcctaaacaaatgagaaccac |
206 |
Q |
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||||||||||||||||||| || || | | |||| |||||| |||| |||||| ||| | |||||||||||||| |||| |
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| T |
53665576 |
tttcaaatgatccaaatacaagtcatccagatcaattgaaatcaattacgaatattctttctaaacaaatgagagccac |
53665654 |
T |
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